Gene Synpcc7942_1294 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSynpcc7942_1294 
Symbol 
ID3773583 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSynechococcus elongatus PCC 7942 
KingdomBacteria 
Replicon accessionNC_007604 
Strand
Start bp1318734 
End bp1320302 
Gene Length1569 bp 
Protein Length522 aa 
Translation table11 
GC content57% 
IMG OID637799724 
Productserine/threonine protein kinase 
Protein accessionYP_400311 
Protein GI81300103 
COG category[K] Transcription
[L] Replication, recombination and repair
[R] General function prediction only
[S] Function unknown
[T] Signal transduction mechanisms 
COG ID[COG0515] Serine/threonine protein kinase
[COG1357] Uncharacterized low-complexity proteins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones30 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones26 
Fosmid unclonability p-value0.315511 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCTCTCT GTCTCAATCC AGACTGCGGA CAGCCAAATA ACGACGACGC TAACAGCAGC 
TGCGCCACTT GCGGCTCACC GCTCCTGCTG CGCGATCGCT ACCGCGTGGT CAAGGCGATC
GGCCAGGGTG GATTTGGAGC GACCTATCTT GGGCAAGACC TCCAGTTGCC AGGAGAACCC
CTCTGCGTCA TCAAGCAGCT GCTGCCCCAG GTGCAAGACC CTGAAATTAT GCTGATGGCG
CGGGAGCTAT TCCGGCGGGA GGCCAAAACC CTCGGCCGCA TTGGCAGCCA TCCCCAAGTC
CCGACACTGT TGGATTATTT CGAAGCCCCC GAAGGCTTTT ATCTAGTTCA AGAATATATT
CGGGGCAAAA CTCTTGAGCA GGAAGTACGG GAGCAGGGAG TTTATAGCGA AACAGCGACC
AAGCAATTCC TGAGTGAACT GCTGCCCCTC CTGCAGTATT TGCATAACCA AGGCGTGATT
CATCGGGACA TCAAGCCAGC GAATTTGCTC CGCCGCGACA TCGATCGCCG CCTTGTCCTG
ATCGACTTTG GCGCGGTCAA AGACCAAGTC AGTCAAATCC AGGGCGGCAG TGGCCTGACA
GCCTTGACCT CCTTCTCTGT CGGCACCCGT GGTTATGCGC CGCCCGAGCA ACTTGCCATG
CGGCCTGTCT ACAGCAGCGA TCTCTATTCC TTGGGAGTGA CCTGTCTGTT CTTGATGACC
GGGAAAGGCC CTCAAGATCT GGATTACAAC CCGGTTACTG GCGAGCTGTT GTGGCGTAAT
TCGGTGCAGG TCAGTGATGC CCTCGCAACC GTACTCGGCA AGATGTTGGC AGCTTCTGTG
CGCTATCGCT ACCAACGAGC TGAGCAAGTG ATGACGGCTC TGGATTTACA GCCTTACCAC
GACAGTCTGA TTCAGGGCCT CAGTGCCTTG CCCCCAGGTG CCCCGCCGAT CAAACCCTCC
TCTGGACGAA CCGGATCAGG CTATCCTTCA CCCCAAGAGC GTCAAGCTGA GGCCATTCGC
GCTCGACGCC GCGATCGCAG TGGCAATCGG CCTGAGCAAC TGGCAGATGC ACAGCAAATC
GCCGCTTGGA CAGGTGGGAC GAGCAATACC TCGGGCAATA ACAGTGCTGG ACGACTCAGC
CTCAATGCCC GTGACATTCT GGCAACCTAC CAGCGTGGAC GGCGTGATTT TAGTCAGCAA
CCGCTCAACC GGATTGACCT GAGTGAATCA CAGTTGCCCA GCGTCAACTT TCAAGGGGCT
CAACTCAAGG AATCGCTCTT TGTTGCCGCT CAGTTAGAGC GTGCAGATTT TGGTCAGGCC
AATCTCCACC GCGCCAATTT GCGACGAGCC AATCTTCATC AGGCCTACTT TGGCAACGCC
GATCTCAGTT TCGCCAATTT GCAGAAGGCA GATCTCAGCG ATGCCATTTT GAGCAATGCC
AACCTGCGGG GCACGAATCT TTGCGGGGCT AACTTGCGGG GTGCCAAGCT GACGCCGGTG
CAGCTAAAGA TGGCGAAAAC GAACTGGTGG ACGATTCTGC CGGATGGCCG CCGAGGGCGA
CTGTTCTAA
 
Protein sequence
MALCLNPDCG QPNNDDANSS CATCGSPLLL RDRYRVVKAI GQGGFGATYL GQDLQLPGEP 
LCVIKQLLPQ VQDPEIMLMA RELFRREAKT LGRIGSHPQV PTLLDYFEAP EGFYLVQEYI
RGKTLEQEVR EQGVYSETAT KQFLSELLPL LQYLHNQGVI HRDIKPANLL RRDIDRRLVL
IDFGAVKDQV SQIQGGSGLT ALTSFSVGTR GYAPPEQLAM RPVYSSDLYS LGVTCLFLMT
GKGPQDLDYN PVTGELLWRN SVQVSDALAT VLGKMLAASV RYRYQRAEQV MTALDLQPYH
DSLIQGLSAL PPGAPPIKPS SGRTGSGYPS PQERQAEAIR ARRRDRSGNR PEQLADAQQI
AAWTGGTSNT SGNNSAGRLS LNARDILATY QRGRRDFSQQ PLNRIDLSES QLPSVNFQGA
QLKESLFVAA QLERADFGQA NLHRANLRRA NLHQAYFGNA DLSFANLQKA DLSDAILSNA
NLRGTNLCGA NLRGAKLTPV QLKMAKTNWW TILPDGRRGR LF