Gene Synpcc7942_1257 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSynpcc7942_1257 
Symbol 
ID3773546 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSynechococcus elongatus PCC 7942 
KingdomBacteria 
Replicon accessionNC_007604 
Strand
Start bp1279685 
End bp1281532 
Gene Length1848 bp 
Protein Length615 aa 
Translation table11 
GC content61% 
IMG OID637799687 
Productchloride channel-like 
Protein accessionYP_400274 
Protein GI81300066 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG0038] Chloride channel protein EriC 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value0.95023 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones33 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACGACCC CTCCTCCTGT TGCTGAGATT CCCAATCCGC CTGTCGGGCT GCACTGGAGC 
AATCCTCTGG TGCGGCTGTT TAGCCCTGAG TCCTACCTAC TGCTGCTCGC GGCTGGCGTT
GGGCTGAGCA CAGGTGCTGC GATCGTAGGC TTCCACTTGC TCTACGAGTC CTTGCATCAA
GGGGTGTTTA GCTGGCTCAG CAGTACGCTC TCAGCTTGGG GTGGCCATCA AACCCTGGCG
CTCATTCCCC TACTGGGCGG TCTGGTGATG GGCGGTCTGA TCCTGATTTG GCCGCGTTTT
GGGCCAAGTA TGACGGGGTT GATTGGCCTA GCGCGTGGGA CTGGTGGTGA TGAACCGCTG
CGGACACCGC AGAAACTTTT TGCCGCATCA CTCTCGCTGG CCAGTGGCGC TTCTCTGGGG
CCGGAAGGAC CGAGTGTGGA GAGTGGCGGC AACTTAGGGC TGGCGATCGC CCGTTGGGCC
AAAATGTCGC GCGAGCGGCA GCTGTTGCTG ATTGGCGCTG GGGCTGCGGC TGGGATTGCA
GCTGGTTTTA ATGCCCCGAT CGCAGGGGTT TTCTTTGCCT TCGAAGTCGT GCTGGGCACC
AGTTTTGCTG GGGCAGCCGT CAGTGCCGTC TTGATTGCGG CCGTCCTGTC GGCGCTGGTT
GCGCAAGTGG GGCTAGGAGC ACAACCGGCT TTTTCCCTGC CAGACTACGT CGTGCGATCG
CCCTTAGAAC TGCCGCTCTA TCTGGGGCTG GGCGTGCTCG CTAGCTTGGT ATCCAGTAGC
TACATGGCAC TGGTGCAGGT GCTGCAGCAA GCCTTTCGCG GCGAAACCGC GATCGGTGCA
GTCTTGGGAC GAATTCCGCG ATCGCTGCGG CCTGCGTTGG CTGGCTTGAT TGTCGGGCTC
GTTGCGCTGC AGTTCCCTCA AGTACTGGGC GTCGGCTACG AAACGATTGA GGGGCTACTC
AGTGGCATGA GCCTGACGCC CCTAACGTTG GTGCTCTTGC TGATCGGTAA GCTCGGCCTC
ACGGCGCTCT GTCTAGCCAG TGGCTTTGTG GGCGGGGGCT TTGCTCCCGC GATGTTCCTC
GGTGCCGTTT TGGGTAGCTT CTACGGCTGG GTGTTAACGG CTTTTTTCCC AACCTCCTGG
ATTCCGATCG CGTCGCCACC GGCCTACGCC ATGGTCGGCA TGGCTGCTGT ACTGGCGGGA
AGTGTCCGTG CTCCATTGAC GGCGATTTTG CTGCTGTTTG AATTGACACG GGACTATCGG
ATTGTGCTGC CACTGATGGC GGCGGCAGGC CTGAGTGCTT GGCTGGCCGA TCGCCTGCGA
CCCAAAGCGA CCCATTCTGA TCTGCCCGGG TTACCCCAAA AGCGAGAGCC AGATTTACCG
CTTCGGTTGC CTGTGGAAGT GGCGCTGCGT CCGGTGGATT GCTGGCTCCC CAGTGACTTA
ACGGCTGATC AAGCCCTAGC CCAGCTGATC GAGGCTGCCA GTTATCACGC CCTCGTGCAC
GATCGCCACG ATCGCGTCTT AGGTTTAGTG ACGTTGCCCG ACCTACAACG CAGCCTCTCA
GCAACTCCGA CAGAACCACT CCTAGCGATC GCCAGCCGAG AGTTGATTTG GGTGCATTGC
GGCGAAAGTC TCGCGGAGGC GATCGCGCGG ATGGATGTGC GCGGCCTGCA GCAATTACCG
GTGCTTGCGG GGGGAACGGA TGAGTCAGCT GTGGCCATGA CTGCGGTTCA AGGCTGGGTC
GATCGCGACA GCATTCAGCA AGCCCTCAAT CTGGCGGAAG CGCAGGATCA ACTCCTGGCC
CATCAAGCCC GTCAACTGAC TGCCCCTGTC TTCACGGAGA AAGCCTGA
 
Protein sequence
MTTPPPVAEI PNPPVGLHWS NPLVRLFSPE SYLLLLAAGV GLSTGAAIVG FHLLYESLHQ 
GVFSWLSSTL SAWGGHQTLA LIPLLGGLVM GGLILIWPRF GPSMTGLIGL ARGTGGDEPL
RTPQKLFAAS LSLASGASLG PEGPSVESGG NLGLAIARWA KMSRERQLLL IGAGAAAGIA
AGFNAPIAGV FFAFEVVLGT SFAGAAVSAV LIAAVLSALV AQVGLGAQPA FSLPDYVVRS
PLELPLYLGL GVLASLVSSS YMALVQVLQQ AFRGETAIGA VLGRIPRSLR PALAGLIVGL
VALQFPQVLG VGYETIEGLL SGMSLTPLTL VLLLIGKLGL TALCLASGFV GGGFAPAMFL
GAVLGSFYGW VLTAFFPTSW IPIASPPAYA MVGMAAVLAG SVRAPLTAIL LLFELTRDYR
IVLPLMAAAG LSAWLADRLR PKATHSDLPG LPQKREPDLP LRLPVEVALR PVDCWLPSDL
TADQALAQLI EAASYHALVH DRHDRVLGLV TLPDLQRSLS ATPTEPLLAI ASRELIWVHC
GESLAEAIAR MDVRGLQQLP VLAGGTDESA VAMTAVQGWV DRDSIQQALN LAEAQDQLLA
HQARQLTAPV FTEKA