Gene Synpcc7942_1246 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSynpcc7942_1246 
Symbol 
ID3773534 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSynechococcus elongatus PCC 7942 
KingdomBacteria 
Replicon accessionNC_007604 
Strand
Start bp1270803 
End bp1272317 
Gene Length1515 bp 
Protein Length504 aa 
Translation table11 
GC content56% 
IMG OID637799675 
Productcarotene isomerase 
Protein accessionYP_400263 
Protein GI81300055 
COG category[Q] Secondary metabolites biosynthesis, transport and catabolism 
COG ID[COG1233] Phytoene dehydrogenase and related proteins 
TIGRFAM ID[TIGR02730] carotene isomerase
[TIGR02734] phytoene desaturase 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0000000176287 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones36 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACTGCTG CGATCGCTGC ACCCGCCTAC GACGCCATCG TGATTGGCTC GGGCATTGGC 
GGACTCGTGA CGGCAACCCA GCTCGCAGCC AAAGGCGCAA AGGTTTTGGT GCTCGAGCGC
TATCTGATTC CGGGCGGAAG TGCGGGCTGG TTCGAGCGGC AAGGCTATCG CTTCGATGTC
GGCGCATCGA TGATCTTTGG CTTTGGCGAT CGCGGCACGA CTAATTTGCT GACTCGCGCC
TTGGCCGATG TTGGGCAAGC GCTGGAAACT ATCCCCGATC CGGTGCAGAT TCATTACCAC
TTGCCGAACC AGCTCGATCT CAAGGTGCAT CGGGACTACG AAGCTTTCCT ACAAGAACTG
ATCGCCCAGT TCCCCCAGGA AGCGGAGGGA ATTCGTCGTT TTTACGACGA GTGTTGGCAG
GTGTTCAACT GCCTTAATGC GATGCCACTA CTGTCGCTCG AGGAACCGAA GTATCTGTTC
AATGTCTTCC TGCAACATCC TTTGGCCTGC TTGGGCCTGG TCAAATATCT GCCCCAGAAT
GTTGGTGATA TTGCACGGCG CTACATTCGC AATCCCGATC TGCTGAAGTT CATCGACATG
GAGTGCTACT GCTGGTCGGT GGTGCCTGCC ACGATGACAC CGATGATCAA TGCTGGTATG
GTCTTTAGCG ATCGCCACTA CGGCGGAATT AACTATCCCA AGGGCGGTGT TGGCCGCATT
GCTGAAAAGC TGGTGGCCGG TCTGGAAGCT AAGGGCAGCA GCATCCGCTA TAAAGCCCGA
GTCACCCGCA TTCTTACCGA AAAGGGTCGA GCGATCGGCG TGGAATTGGC GGATGGTGAA
AAACTCTACG CGAAGCGAAT TATCTCCAAC GCCACCCGCT GGAATACCTT TGGCGAACTG
CTACCGCCAC AACAAGAACC CGCTCAGGAA CAGCGCTGGC AACAACGCTA TCGCCAGTCG
CCCAGTTTCC TCAGTCTTCA TCTCGGAGTC AAAGCCGATT TGCTGCCAGC TGGCACAGAA
TGCCACCACA TCCTGCTGGA AAATTGGGAT GAATTGGAAG TGGAACAAGG CACAATCTTT
GTCTCGATTC CGACCCTGCT CGATCCCTCT TTAGCTCCGC CCGATCGCCA CATTATTCAC
ACCTTCACGC CCAGCTGGTT GGGTGAATGG GATAACCTCA GCCCCAGTGA ATACCGCGAT
CGCAAGGCAG CAGCGGCCGC AAAACTGATT CAGCGATTGG AGGCGATCTT CCCGGGATTA
AGCAGCGCGA TCGACTATCA AGAAGTCGGT ACGCCCCGCA CCCATCGCCG CTTTTTGGGT
CGGCAAAACG GCACCTATGG GCCAATTCCG CGTCGTAAAT TGGCAGGCTT GCTGGGGATG
CCCTTCAATC GCACCGCAAT TCCTGGTTTG TACTGCGTCG GCGACAGCAC TTTCCCCGGT
CAGGGACTAA ACGCAGTGGC TTTCTCAGGT TACGCCTGTG GCCACCGGGT CGCCGCTGAC
TTGGGTTTGG TCTAA
 
Protein sequence
MTAAIAAPAY DAIVIGSGIG GLVTATQLAA KGAKVLVLER YLIPGGSAGW FERQGYRFDV 
GASMIFGFGD RGTTNLLTRA LADVGQALET IPDPVQIHYH LPNQLDLKVH RDYEAFLQEL
IAQFPQEAEG IRRFYDECWQ VFNCLNAMPL LSLEEPKYLF NVFLQHPLAC LGLVKYLPQN
VGDIARRYIR NPDLLKFIDM ECYCWSVVPA TMTPMINAGM VFSDRHYGGI NYPKGGVGRI
AEKLVAGLEA KGSSIRYKAR VTRILTEKGR AIGVELADGE KLYAKRIISN ATRWNTFGEL
LPPQQEPAQE QRWQQRYRQS PSFLSLHLGV KADLLPAGTE CHHILLENWD ELEVEQGTIF
VSIPTLLDPS LAPPDRHIIH TFTPSWLGEW DNLSPSEYRD RKAAAAAKLI QRLEAIFPGL
SSAIDYQEVG TPRTHRRFLG RQNGTYGPIP RRKLAGLLGM PFNRTAIPGL YCVGDSTFPG
QGLNAVAFSG YACGHRVAAD LGLV