| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Synpcc7942_1246 |
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| Symbol | |
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| ID | 3773534 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Synechococcus elongatus PCC 7942 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007604 |
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| Strand | + |
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| Start bp | 1270803 |
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| End bp | 1272317 |
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| Gene Length | 1515 bp |
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| Protein Length | 504 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 637799675 |
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| Product | carotene isomerase |
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| Protein accession | YP_400263 |
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| Protein GI | 81300055 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG1233] Phytoene dehydrogenase and related proteins |
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| TIGRFAM ID | [TIGR02730] carotene isomerase
[TIGR02734] phytoene desaturase |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.0000000176287 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 36 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTGCTG CGATCGCTGC ACCCGCCTAC GACGCCATCG TGATTGGCTC GGGCATTGGC
GGACTCGTGA CGGCAACCCA GCTCGCAGCC AAAGGCGCAA AGGTTTTGGT GCTCGAGCGC
TATCTGATTC CGGGCGGAAG TGCGGGCTGG TTCGAGCGGC AAGGCTATCG CTTCGATGTC
GGCGCATCGA TGATCTTTGG CTTTGGCGAT CGCGGCACGA CTAATTTGCT GACTCGCGCC
TTGGCCGATG TTGGGCAAGC GCTGGAAACT ATCCCCGATC CGGTGCAGAT TCATTACCAC
TTGCCGAACC AGCTCGATCT CAAGGTGCAT CGGGACTACG AAGCTTTCCT ACAAGAACTG
ATCGCCCAGT TCCCCCAGGA AGCGGAGGGA ATTCGTCGTT TTTACGACGA GTGTTGGCAG
GTGTTCAACT GCCTTAATGC GATGCCACTA CTGTCGCTCG AGGAACCGAA GTATCTGTTC
AATGTCTTCC TGCAACATCC TTTGGCCTGC TTGGGCCTGG TCAAATATCT GCCCCAGAAT
GTTGGTGATA TTGCACGGCG CTACATTCGC AATCCCGATC TGCTGAAGTT CATCGACATG
GAGTGCTACT GCTGGTCGGT GGTGCCTGCC ACGATGACAC CGATGATCAA TGCTGGTATG
GTCTTTAGCG ATCGCCACTA CGGCGGAATT AACTATCCCA AGGGCGGTGT TGGCCGCATT
GCTGAAAAGC TGGTGGCCGG TCTGGAAGCT AAGGGCAGCA GCATCCGCTA TAAAGCCCGA
GTCACCCGCA TTCTTACCGA AAAGGGTCGA GCGATCGGCG TGGAATTGGC GGATGGTGAA
AAACTCTACG CGAAGCGAAT TATCTCCAAC GCCACCCGCT GGAATACCTT TGGCGAACTG
CTACCGCCAC AACAAGAACC CGCTCAGGAA CAGCGCTGGC AACAACGCTA TCGCCAGTCG
CCCAGTTTCC TCAGTCTTCA TCTCGGAGTC AAAGCCGATT TGCTGCCAGC TGGCACAGAA
TGCCACCACA TCCTGCTGGA AAATTGGGAT GAATTGGAAG TGGAACAAGG CACAATCTTT
GTCTCGATTC CGACCCTGCT CGATCCCTCT TTAGCTCCGC CCGATCGCCA CATTATTCAC
ACCTTCACGC CCAGCTGGTT GGGTGAATGG GATAACCTCA GCCCCAGTGA ATACCGCGAT
CGCAAGGCAG CAGCGGCCGC AAAACTGATT CAGCGATTGG AGGCGATCTT CCCGGGATTA
AGCAGCGCGA TCGACTATCA AGAAGTCGGT ACGCCCCGCA CCCATCGCCG CTTTTTGGGT
CGGCAAAACG GCACCTATGG GCCAATTCCG CGTCGTAAAT TGGCAGGCTT GCTGGGGATG
CCCTTCAATC GCACCGCAAT TCCTGGTTTG TACTGCGTCG GCGACAGCAC TTTCCCCGGT
CAGGGACTAA ACGCAGTGGC TTTCTCAGGT TACGCCTGTG GCCACCGGGT CGCCGCTGAC
TTGGGTTTGG TCTAA
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| Protein sequence | MTAAIAAPAY DAIVIGSGIG GLVTATQLAA KGAKVLVLER YLIPGGSAGW FERQGYRFDV
GASMIFGFGD RGTTNLLTRA LADVGQALET IPDPVQIHYH LPNQLDLKVH RDYEAFLQEL
IAQFPQEAEG IRRFYDECWQ VFNCLNAMPL LSLEEPKYLF NVFLQHPLAC LGLVKYLPQN
VGDIARRYIR NPDLLKFIDM ECYCWSVVPA TMTPMINAGM VFSDRHYGGI NYPKGGVGRI
AEKLVAGLEA KGSSIRYKAR VTRILTEKGR AIGVELADGE KLYAKRIISN ATRWNTFGEL
LPPQQEPAQE QRWQQRYRQS PSFLSLHLGV KADLLPAGTE CHHILLENWD ELEVEQGTIF
VSIPTLLDPS LAPPDRHIIH TFTPSWLGEW DNLSPSEYRD RKAAAAAKLI QRLEAIFPGL
SSAIDYQEVG TPRTHRRFLG RQNGTYGPIP RRKLAGLLGM PFNRTAIPGL YCVGDSTFPG
QGLNAVAFSG YACGHRVAAD LGLV
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