Gene Synpcc7942_1200 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSynpcc7942_1200 
Symbol 
ID3774436 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSynechococcus elongatus PCC 7942 
KingdomBacteria 
Replicon accessionNC_007604 
Strand
Start bp1228048 
End bp1229061 
Gene Length1014 bp 
Protein Length337 aa 
Translation table11 
GC content58% 
IMG OID637799627 
Producthypothetical protein 
Protein accessionYP_400217 
Protein GI81300009 
COG category[S] Function unknown 
COG ID[COG0392] Predicted integral membrane protein 
TIGRFAM ID[TIGR00374] conserved hypothetical protein 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value0.160085 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones43 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGACTGCTG CTAAACCTCG CGCCTCAACC ATCCCGGGCC AGCGCTGGAT TTTACCGCTG 
CTGTTGGTCA CCGCATTGCT CAATCTGGGG CTGATGATTT GGGGTGGCTG GCAGACGATT
TGGCAACAGT TTCGCCAGAT TCCAATCGCC TTCTATCCCC TCAGCCTCCT GCTGATGGGT
TTGAGCTATA GTCTGGGCTT TTGGCGCTGG CACACCTATT TGCAAGTGCT TGATCATTGG
CTGCCAGTCC GTTCCAGCCT GCGCATTTTC CTCGGCAGCT TAGCCCTGAT AGCCTCACCG
GGACGAGCCG GAGAATCAAT CAAAGCCCTG TGGTTACGGC AACAATTTGG CGTTTCGGCG
GCGCGATCGC TGGCGGGGCT GTTCTGTGAA CGGCTCTGTG ATCTACTGGC CGCTTTGCTG
TTAGTCGCCC TGGGATTCTC TGCTCGCTTG GGTACGGGCT TCTGGTGGGC CTGTCTGGGC
CTGGCGATCG CTCTATTTCT GATCCTGAGC CAGCCTCAAC GCCTACAGGC TTGGGCCAAA
CGCTTTGGCG GGCGATCGCG ACGGCGCAAA GGCTTAGAGC GCTTGGCGCA TCTCCTCTTC
AGCGCCCGTC GCCTGCTGCA ACCGCGATTT TTGGCGGGTG GCTTGCTGAT TTCGCTGCTC
ACTTGGGCGA TCGAAGGGGT CGTGCTCTAC GGCTGTTTTC AGGTGTTGCA AGCCGAGATC
AATCTGCCGA CAGCGATCGT AATTCGAGCC GCTGTGGGTT TGGGTGGAGT ACTAACGCTG
CTCCCCGGCG GCTTGGGGGG GGCAGAAGCT GCCTCGATTT CCTTGGCGTT GCTCTACGGG
GCCGATCGCG ATCAAGCGAT TGCAGCGACG GTGCTGCTTC GTCTGCTCAC TCTTTGGTTC
CCGATCGCGA TCGGTTGGGT AGCCTTGCAT CGCCAAACAC GTACCCTCAA ATCTCTCGCG
TTGTCTTCTC TCCCTGACAC TGATGCTGAC CAGTCGCCAA AATCCTCTCA CTAA
 
Protein sequence
MTAAKPRAST IPGQRWILPL LLVTALLNLG LMIWGGWQTI WQQFRQIPIA FYPLSLLLMG 
LSYSLGFWRW HTYLQVLDHW LPVRSSLRIF LGSLALIASP GRAGESIKAL WLRQQFGVSA
ARSLAGLFCE RLCDLLAALL LVALGFSARL GTGFWWACLG LAIALFLILS QPQRLQAWAK
RFGGRSRRRK GLERLAHLLF SARRLLQPRF LAGGLLISLL TWAIEGVVLY GCFQVLQAEI
NLPTAIVIRA AVGLGGVLTL LPGGLGGAEA ASISLALLYG ADRDQAIAAT VLLRLLTLWF
PIAIGWVALH RQTRTLKSLA LSSLPDTDAD QSPKSSH