Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Synpcc7942_1197 |
Symbol | trpC |
ID | 3774433 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Synechococcus elongatus PCC 7942 |
Kingdom | Bacteria |
Replicon accession | NC_007604 |
Strand | - |
Start bp | 1224841 |
End bp | 1225728 |
Gene Length | 888 bp |
Protein Length | 295 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 637799624 |
Product | indole-3-glycerol-phosphate synthase |
Protein accession | YP_400214 |
Protein GI | 81300006 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0134] Indole-3-glycerol phosphate synthase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 0.075446 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 43 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGAAGTCC GCCGCCGTCC CCCCAATCCA GCTGTGCATG TTGCCAGCCT CACCTATCAG GTCAAGGTGC CGGGGAGCAG CCCCAGCAAC ATCCTCGAAG AGATTGTTTG GTATAAGGAG CGCGAGGTGA ATGCTTGGCG AGAGCAGCTG CCGCTGCAGC AGCTCCAGAA CCAAGTCCGC GGCTTGACCC AAACGCCCCG TGACTTTTTG GCAGCACTGC GACAGGCACC GACTCGACCG GCCGTGATTG CCGAAGTCAA AAAAGCATCT CCTAGCAAAG GCGTACTGCG AGAAGATTTC GATCCCGTGG CGATCGCCCA AGCCTATGCG GCTAATGGGG CGGCTTGCAT TTCGGTGCTG ACCGACGAGA AGTTTTTCCA AGGCGGCTTC GAAAATCTAC AGCGGGTGCG AGCAGCAGTC GATGTACCGC TGCTCTGCAA AGACTTTGTG ATCTACCCCT ATCAGATCTA CAAAGCCCGC TTACTGGGGG CCGATGCCGT GCTGTTGATC GCGGCGATTC TTTCGGATGC TGACCTGCGC TACTTCCTGA AGATCGCCCA CAGTCTGGGA CTCAATGCGC TGGTGGAAGT GCATAGCCTG CCGGAACTTG AGCGTGTCCT TGCCTTGGAT GATCTGCGGC TGGTTGGCAT TAACAACCGC AACCTCAAGA CTTTTGTGAC CGATCTGGCG GTGACAGAGC ATCTTGCTGC CCAATGCCGC GATCGCGATT TGCTCTTGGT CAGTGAATCG GGTTTGTTCA CCGGCGCCGA TCTCGATCGC GTTACCCAAG CTGGCGCACA GGCCGTCTTG ATCGGTGAAT CGCTGGTCAA GCAACCGGAT CCAGGCTTGG CACTGCAGCA GTTAGTTGGC GATCGCCCCT CAGCCTAA
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Protein sequence | MEVRRRPPNP AVHVASLTYQ VKVPGSSPSN ILEEIVWYKE REVNAWREQL PLQQLQNQVR GLTQTPRDFL AALRQAPTRP AVIAEVKKAS PSKGVLREDF DPVAIAQAYA ANGAACISVL TDEKFFQGGF ENLQRVRAAV DVPLLCKDFV IYPYQIYKAR LLGADAVLLI AAILSDADLR YFLKIAHSLG LNALVEVHSL PELERVLALD DLRLVGINNR NLKTFVTDLA VTEHLAAQCR DRDLLLVSES GLFTGADLDR VTQAGAQAVL IGESLVKQPD PGLALQQLVG DRPSA
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