Gene Synpcc7942_1197 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSynpcc7942_1197 
SymboltrpC 
ID3774433 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSynechococcus elongatus PCC 7942 
KingdomBacteria 
Replicon accessionNC_007604 
Strand
Start bp1224841 
End bp1225728 
Gene Length888 bp 
Protein Length295 aa 
Translation table11 
GC content58% 
IMG OID637799624 
Productindole-3-glycerol-phosphate synthase 
Protein accessionYP_400214 
Protein GI81300006 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0134] Indole-3-glycerol phosphate synthase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value0.075446 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones43 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAAGTCC GCCGCCGTCC CCCCAATCCA GCTGTGCATG TTGCCAGCCT CACCTATCAG 
GTCAAGGTGC CGGGGAGCAG CCCCAGCAAC ATCCTCGAAG AGATTGTTTG GTATAAGGAG
CGCGAGGTGA ATGCTTGGCG AGAGCAGCTG CCGCTGCAGC AGCTCCAGAA CCAAGTCCGC
GGCTTGACCC AAACGCCCCG TGACTTTTTG GCAGCACTGC GACAGGCACC GACTCGACCG
GCCGTGATTG CCGAAGTCAA AAAAGCATCT CCTAGCAAAG GCGTACTGCG AGAAGATTTC
GATCCCGTGG CGATCGCCCA AGCCTATGCG GCTAATGGGG CGGCTTGCAT TTCGGTGCTG
ACCGACGAGA AGTTTTTCCA AGGCGGCTTC GAAAATCTAC AGCGGGTGCG AGCAGCAGTC
GATGTACCGC TGCTCTGCAA AGACTTTGTG ATCTACCCCT ATCAGATCTA CAAAGCCCGC
TTACTGGGGG CCGATGCCGT GCTGTTGATC GCGGCGATTC TTTCGGATGC TGACCTGCGC
TACTTCCTGA AGATCGCCCA CAGTCTGGGA CTCAATGCGC TGGTGGAAGT GCATAGCCTG
CCGGAACTTG AGCGTGTCCT TGCCTTGGAT GATCTGCGGC TGGTTGGCAT TAACAACCGC
AACCTCAAGA CTTTTGTGAC CGATCTGGCG GTGACAGAGC ATCTTGCTGC CCAATGCCGC
GATCGCGATT TGCTCTTGGT CAGTGAATCG GGTTTGTTCA CCGGCGCCGA TCTCGATCGC
GTTACCCAAG CTGGCGCACA GGCCGTCTTG ATCGGTGAAT CGCTGGTCAA GCAACCGGAT
CCAGGCTTGG CACTGCAGCA GTTAGTTGGC GATCGCCCCT CAGCCTAA
 
Protein sequence
MEVRRRPPNP AVHVASLTYQ VKVPGSSPSN ILEEIVWYKE REVNAWREQL PLQQLQNQVR 
GLTQTPRDFL AALRQAPTRP AVIAEVKKAS PSKGVLREDF DPVAIAQAYA ANGAACISVL
TDEKFFQGGF ENLQRVRAAV DVPLLCKDFV IYPYQIYKAR LLGADAVLLI AAILSDADLR
YFLKIAHSLG LNALVEVHSL PELERVLALD DLRLVGINNR NLKTFVTDLA VTEHLAAQCR
DRDLLLVSES GLFTGADLDR VTQAGAQAVL IGESLVKQPD PGLALQQLVG DRPSA