Gene Synpcc7942_1180 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSynpcc7942_1180 
Symbol 
ID3775486 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSynechococcus elongatus PCC 7942 
KingdomBacteria 
Replicon accessionNC_007604 
Strand
Start bp1211703 
End bp1212104 
Gene Length402 bp 
Protein Length133 aa 
Translation table11 
GC content54% 
IMG OID637799607 
ProductNADH dehydrogenase subunit A 
Protein accessionYP_400197 
Protein GI81299989 
COG category[C] Energy production and conversion 
COG ID[COG0838] NADH:ubiquinone oxidoreductase subunit 3 (chain A) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones31 
Plasmid unclonability p-value0.675934 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones43 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCAAAAT GGAATAGCGA CTGCAGCCTG GAGTTTGGCG TGTTTGTCCT CAATGGCTAC 
GAATATCTAC TTGGCTTTCT GCTCATCAGC TCACTGGTCC CCATCCTTTC GCTGACCGCC
TCGCGCTTGC TGCGACCTGG TCGTCGAGGA CCGGAGCGGC GGACGACCTA CGAATCGGGG
ATGGAACCGA TCGGGGGAGC TTGGATCCAA TTCAACGTGC GCTACTACAT GTTTGCGCTC
GTATTCGTGA TCTTTGATGT AGAAACCGTC TTCCTCTATC CCTGGGCCGT CGCCTTTAAT
CGGCTGGGGT TACTGGCTTT TGTCGAGGCG TTGATCTTCA TCACGATCCT CGTTGTTGGT
CTAGCCTATG CATGGCGCAA AGGAGCCTTG GAATGGTCCT GA
 
Protein sequence
MAKWNSDCSL EFGVFVLNGY EYLLGFLLIS SLVPILSLTA SRLLRPGRRG PERRTTYESG 
MEPIGGAWIQ FNVRYYMFAL VFVIFDVETV FLYPWAVAFN RLGLLAFVEA LIFITILVVG
LAYAWRKGAL EWS