| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Synpcc7942_1158 |
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| Symbol | |
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| ID | 3775108 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Synechococcus elongatus PCC 7942 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007604 |
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| Strand | - |
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| Start bp | 1189305 |
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| End bp | 1192448 |
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| Gene Length | 3144 bp |
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| Protein Length | 1047 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 637799584 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) |
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| Protein accession | YP_400175 |
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| Protein GI | 81299967 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.122124 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 42 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAACAAT CTTCACGCCA GTTCTTCGAG CAAATTAGCC GCGAAGATTG GGAACAAACG
CCGGAAAGTG TTCAGCAACT CGTTAGAGCA CTACTCGCTG AAAGCGACTT GGTCACCGAG
GAAAGTGAAC AAGCAAGTAC TGGCCGTCTT GCCATCGATC AATACTTTCG AGAGAGTCTA
CGCTACCAAC AGGTTGTCGA AGCCCAGACA GACTTGATTC TGCGATCGCG TTCAGATACG
ACGGTTGTAT TTGCCAACAA ACCTCTTTGT CAAGTTCTTG GTTGGCAAGA TGGAGATATC
AGCGGACAAA CTTGGGGAAA CTTGGTTCCT CCAAATGATC TCTCTGAACT TCATGAAAAA
ATTGCAGGAT TAAGCCTAGA AAATCCAACT TTTGAAAGCT TAAACCGTAA CTACGGAGCT
GATCAGAGAA TAAAATGGAT TCAATGGGTT AATCAAGGCA TCTTTAATGA CAGAGGAGAG
CTGATTGAGA TCCAGTCTGT TGGCCGAGAT GTCACAACTC TAATTGAGCA AATCACAAGG
GAAAAAACAT TAAATTATGT CTTTGAAGCA ATCCGAAATT CCCTGGATTT AGAGGTTATT
TTTGCAACTG CAACTAAAGA ATTAGCGAAA ACATTAAATG GTTTAGATTG TTATATTGTC
CAGTATTTGG AAGAGCAAAG AATCTGGACT CATGTTGCTG AGTTTCAGCA TGACGAAAAT
CAAGAATCAA GACTCGGCAT TGAGATTCAG GACTTAGACA ACCCTTTCGC AGAACAGTTA
AAAAAATTCC AAGTTGTTAG AGTTGAAAAT ACTCAAAATA TTAATGACAA GATCAATAGA
GAGCTAGCTA AGTCTACACC TGGAGCGTGG CTACTGGTTC CCTTGATTGT TGAAGAAAAA
TTATGGGGGA GCTTCACAAT TGTTTCAAAT CAGAAACCTT TTATATGGAG TGATGGTTAT
GTTGATCTTG CCAGAAGTAT TTCTAGACAA TTAGAGATTG CTATTTATCA AGCTGATCTC
TATCAAAAAA TTCAACAGGA ACTAAGCGAT CGCAGCAAAG CAGAGCTGGC TCTACAAGAA
AGCCAGACCC GATTTCAAAG AATCGCTGAC AATTTGCCAG GAATTATTTA TGGCTATAAA
TTGAGGCAGG ATGGCACAGA TCAATTCACC TATATTAGTT CTGGTTTTAG AGAGGTTTAT
GGCATTGATC CAGAAACAGC TTTAGAAAAC AGTAATGTTG TTTGGGGAAT GATTCATCCA
GAAGATATTG AGTACTTAAA GACTTCAATC ATCAAGTCTC AGCAAACACT TAAAACTTGG
AAGGTTGAAT ATCGAATCAT TACTAAGAAT GGTGAATTAA AATGGATGCA GGGACGAGCT
CGTCCGACTC GCCAAGAAAA CGGTGAGACT TTTTGGGATG GACTCATTAT TGATATTAGC
GATCGCAAAA AAATAGAAGC TGAATTACAA ACAAGTGAGG AGCGCTATCG GCTACTAGCT
GAAAATATGA ATGATTTAGT CTGTTTGCAT CAAGCAGATG GAACTTACCT TTATGTCAGC
CCTTCTGCTG AAGCCCTACT GGGATTCAGT AGTGAGGAAA TGGTCGGCCA GAACCCCTAT
GATTTTTTCC ACCCAGAAGA CTGCGATCGC ATCCGAGATG AAGCTCACCA AGCCGTGTTA
ATGGGGGCCG AACTACCGAT TGTTTATCGA ATGCGAAAAA AACTAGGGGG ATATATTTGG
TTTGAGACTC TCACTAAACC GATCATGGAT GATCAAGGTG TTGTGATTGG ACTACAAACA
ACCTCTCGGG ATGTAACTCA GCGTATTGAA ATTCAAAATC AGCTTCAATA TGATGCTTGT
CACGATAGTC TAACGGGGTT AGCTAACCGT AATTTACTAA TTGAAAGACT TGAACTATCG
CTTAAAAGAT CAAAAAGATT ACAAAACTAT AAGTACGCAG TCTTATTCCT TGATCTCGAT
CGCTTCAAAG TGATTAACGA TAGCTTGGGG CATATCACAG GCGATCAGCT TTTGGTCAGC
ATCGCCCAAA AGCTACAGTC AATAATTCGC TCTCATGACT TGGCTGCTCG CTTAGGAGGT
GATGAATTTG TAGTTCTAGT CGAGGATATT CAAACCTTTG ATGAGCCAAT CAAAGTTGCC
GAGCGAATTC TTGCAGCTAT TCAAGTTCCT TTAGAACTCG AAGAACGGTC AATTTACACC
TCAACAAGTA TTGGCATTGT CTTTGGTAGC CATGAGTATG AGAGTGCAAC ACAGCTGCTG
AGAGATGCGG ATACTGCGAT GTATCGGGCA AAATCTAGGG GTAGAGCTCG CTACGAAGTT
TTTGATAGCG CAATGCATTC TCAAGCTTTA GCGAGGTTAC ATCTCGAAAA TGACTTGCGG
CAAGCGATCG CTCGACAAGA ATTTGTCCTC TACTACCAGC CAATTATCCA ATTGCAGACT
GGTAAGATTA CAGGCTTCGA GGCTTTGATT CGTTGGCAGC ATCCAACTGA GGGCATCAAG
CTGCCGATCG ACCTAATCCC TATTGCGGAA GAGACGGGTT TAATCACCAG TATTGACTAT
TGGGTACTAA ATCAAGCCTG TCGGCAGCTC TCTGAATGGC AAGCCAGCTA TTCACAGGCA
GCAGATTTAA GTATGAGCGT GAATCTATCG GCTCAAAACC TTCAGCATGA CCACCTCATG
GATGAAATTC AATCGGTTTT GCAAGCTACA AAGATTAAGC CTGGCTCATT AACTTTAGAA
ATTACGGAAA GTATGCTGAT TGAAAATACC GATCAGACAA TTCAACTACT TGCCGCCATT
AATGAGCAAG GCATAGAAAT TAGCATTGAT GACTTTGGAA CCGGATATTC CTCGTTGAGT
TATCTGCACA AACTACCTGT CAACAACCTA AAGGTTGATG GCTCGTTTGT TCGTAAAATT
ACGACTGAAT CAACTAATTA CCAGATCGTT AATACTATCA TTGCCCTAAA TAATCAACTA
GGACTAAAAG CGATCGCAGA GGGAATTGAA ACCCATGAGC AACTCGACCT ACTTAGTCAG
TTAGGCTACC AGTATGGCCA AGGATATCTC TTTGCTAGAC CCCTTAATGC CAAAGATGTT
GAGCAGCTTT TCTTGAGCAA TTAA
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| Protein sequence | MEQSSRQFFE QISREDWEQT PESVQQLVRA LLAESDLVTE ESEQASTGRL AIDQYFRESL
RYQQVVEAQT DLILRSRSDT TVVFANKPLC QVLGWQDGDI SGQTWGNLVP PNDLSELHEK
IAGLSLENPT FESLNRNYGA DQRIKWIQWV NQGIFNDRGE LIEIQSVGRD VTTLIEQITR
EKTLNYVFEA IRNSLDLEVI FATATKELAK TLNGLDCYIV QYLEEQRIWT HVAEFQHDEN
QESRLGIEIQ DLDNPFAEQL KKFQVVRVEN TQNINDKINR ELAKSTPGAW LLVPLIVEEK
LWGSFTIVSN QKPFIWSDGY VDLARSISRQ LEIAIYQADL YQKIQQELSD RSKAELALQE
SQTRFQRIAD NLPGIIYGYK LRQDGTDQFT YISSGFREVY GIDPETALEN SNVVWGMIHP
EDIEYLKTSI IKSQQTLKTW KVEYRIITKN GELKWMQGRA RPTRQENGET FWDGLIIDIS
DRKKIEAELQ TSEERYRLLA ENMNDLVCLH QADGTYLYVS PSAEALLGFS SEEMVGQNPY
DFFHPEDCDR IRDEAHQAVL MGAELPIVYR MRKKLGGYIW FETLTKPIMD DQGVVIGLQT
TSRDVTQRIE IQNQLQYDAC HDSLTGLANR NLLIERLELS LKRSKRLQNY KYAVLFLDLD
RFKVINDSLG HITGDQLLVS IAQKLQSIIR SHDLAARLGG DEFVVLVEDI QTFDEPIKVA
ERILAAIQVP LELEERSIYT STSIGIVFGS HEYESATQLL RDADTAMYRA KSRGRARYEV
FDSAMHSQAL ARLHLENDLR QAIARQEFVL YYQPIIQLQT GKITGFEALI RWQHPTEGIK
LPIDLIPIAE ETGLITSIDY WVLNQACRQL SEWQASYSQA ADLSMSVNLS AQNLQHDHLM
DEIQSVLQAT KIKPGSLTLE ITESMLIENT DQTIQLLAAI NEQGIEISID DFGTGYSSLS
YLHKLPVNNL KVDGSFVRKI TTESTNYQIV NTIIALNNQL GLKAIAEGIE THEQLDLLSQ
LGYQYGQGYL FARPLNAKDV EQLFLSN
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