Gene Synpcc7942_1158 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSynpcc7942_1158 
Symbol 
ID3775108 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSynechococcus elongatus PCC 7942 
KingdomBacteria 
Replicon accessionNC_007604 
Strand
Start bp1189305 
End bp1192448 
Gene Length3144 bp 
Protein Length1047 aa 
Translation table11 
GC content41% 
IMG OID637799584 
Productdiguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) 
Protein accessionYP_400175 
Protein GI81299967 
COG category[T] Signal transduction mechanisms 
COG ID[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.122124 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones42 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAACAAT CTTCACGCCA GTTCTTCGAG CAAATTAGCC GCGAAGATTG GGAACAAACG 
CCGGAAAGTG TTCAGCAACT CGTTAGAGCA CTACTCGCTG AAAGCGACTT GGTCACCGAG
GAAAGTGAAC AAGCAAGTAC TGGCCGTCTT GCCATCGATC AATACTTTCG AGAGAGTCTA
CGCTACCAAC AGGTTGTCGA AGCCCAGACA GACTTGATTC TGCGATCGCG TTCAGATACG
ACGGTTGTAT TTGCCAACAA ACCTCTTTGT CAAGTTCTTG GTTGGCAAGA TGGAGATATC
AGCGGACAAA CTTGGGGAAA CTTGGTTCCT CCAAATGATC TCTCTGAACT TCATGAAAAA
ATTGCAGGAT TAAGCCTAGA AAATCCAACT TTTGAAAGCT TAAACCGTAA CTACGGAGCT
GATCAGAGAA TAAAATGGAT TCAATGGGTT AATCAAGGCA TCTTTAATGA CAGAGGAGAG
CTGATTGAGA TCCAGTCTGT TGGCCGAGAT GTCACAACTC TAATTGAGCA AATCACAAGG
GAAAAAACAT TAAATTATGT CTTTGAAGCA ATCCGAAATT CCCTGGATTT AGAGGTTATT
TTTGCAACTG CAACTAAAGA ATTAGCGAAA ACATTAAATG GTTTAGATTG TTATATTGTC
CAGTATTTGG AAGAGCAAAG AATCTGGACT CATGTTGCTG AGTTTCAGCA TGACGAAAAT
CAAGAATCAA GACTCGGCAT TGAGATTCAG GACTTAGACA ACCCTTTCGC AGAACAGTTA
AAAAAATTCC AAGTTGTTAG AGTTGAAAAT ACTCAAAATA TTAATGACAA GATCAATAGA
GAGCTAGCTA AGTCTACACC TGGAGCGTGG CTACTGGTTC CCTTGATTGT TGAAGAAAAA
TTATGGGGGA GCTTCACAAT TGTTTCAAAT CAGAAACCTT TTATATGGAG TGATGGTTAT
GTTGATCTTG CCAGAAGTAT TTCTAGACAA TTAGAGATTG CTATTTATCA AGCTGATCTC
TATCAAAAAA TTCAACAGGA ACTAAGCGAT CGCAGCAAAG CAGAGCTGGC TCTACAAGAA
AGCCAGACCC GATTTCAAAG AATCGCTGAC AATTTGCCAG GAATTATTTA TGGCTATAAA
TTGAGGCAGG ATGGCACAGA TCAATTCACC TATATTAGTT CTGGTTTTAG AGAGGTTTAT
GGCATTGATC CAGAAACAGC TTTAGAAAAC AGTAATGTTG TTTGGGGAAT GATTCATCCA
GAAGATATTG AGTACTTAAA GACTTCAATC ATCAAGTCTC AGCAAACACT TAAAACTTGG
AAGGTTGAAT ATCGAATCAT TACTAAGAAT GGTGAATTAA AATGGATGCA GGGACGAGCT
CGTCCGACTC GCCAAGAAAA CGGTGAGACT TTTTGGGATG GACTCATTAT TGATATTAGC
GATCGCAAAA AAATAGAAGC TGAATTACAA ACAAGTGAGG AGCGCTATCG GCTACTAGCT
GAAAATATGA ATGATTTAGT CTGTTTGCAT CAAGCAGATG GAACTTACCT TTATGTCAGC
CCTTCTGCTG AAGCCCTACT GGGATTCAGT AGTGAGGAAA TGGTCGGCCA GAACCCCTAT
GATTTTTTCC ACCCAGAAGA CTGCGATCGC ATCCGAGATG AAGCTCACCA AGCCGTGTTA
ATGGGGGCCG AACTACCGAT TGTTTATCGA ATGCGAAAAA AACTAGGGGG ATATATTTGG
TTTGAGACTC TCACTAAACC GATCATGGAT GATCAAGGTG TTGTGATTGG ACTACAAACA
ACCTCTCGGG ATGTAACTCA GCGTATTGAA ATTCAAAATC AGCTTCAATA TGATGCTTGT
CACGATAGTC TAACGGGGTT AGCTAACCGT AATTTACTAA TTGAAAGACT TGAACTATCG
CTTAAAAGAT CAAAAAGATT ACAAAACTAT AAGTACGCAG TCTTATTCCT TGATCTCGAT
CGCTTCAAAG TGATTAACGA TAGCTTGGGG CATATCACAG GCGATCAGCT TTTGGTCAGC
ATCGCCCAAA AGCTACAGTC AATAATTCGC TCTCATGACT TGGCTGCTCG CTTAGGAGGT
GATGAATTTG TAGTTCTAGT CGAGGATATT CAAACCTTTG ATGAGCCAAT CAAAGTTGCC
GAGCGAATTC TTGCAGCTAT TCAAGTTCCT TTAGAACTCG AAGAACGGTC AATTTACACC
TCAACAAGTA TTGGCATTGT CTTTGGTAGC CATGAGTATG AGAGTGCAAC ACAGCTGCTG
AGAGATGCGG ATACTGCGAT GTATCGGGCA AAATCTAGGG GTAGAGCTCG CTACGAAGTT
TTTGATAGCG CAATGCATTC TCAAGCTTTA GCGAGGTTAC ATCTCGAAAA TGACTTGCGG
CAAGCGATCG CTCGACAAGA ATTTGTCCTC TACTACCAGC CAATTATCCA ATTGCAGACT
GGTAAGATTA CAGGCTTCGA GGCTTTGATT CGTTGGCAGC ATCCAACTGA GGGCATCAAG
CTGCCGATCG ACCTAATCCC TATTGCGGAA GAGACGGGTT TAATCACCAG TATTGACTAT
TGGGTACTAA ATCAAGCCTG TCGGCAGCTC TCTGAATGGC AAGCCAGCTA TTCACAGGCA
GCAGATTTAA GTATGAGCGT GAATCTATCG GCTCAAAACC TTCAGCATGA CCACCTCATG
GATGAAATTC AATCGGTTTT GCAAGCTACA AAGATTAAGC CTGGCTCATT AACTTTAGAA
ATTACGGAAA GTATGCTGAT TGAAAATACC GATCAGACAA TTCAACTACT TGCCGCCATT
AATGAGCAAG GCATAGAAAT TAGCATTGAT GACTTTGGAA CCGGATATTC CTCGTTGAGT
TATCTGCACA AACTACCTGT CAACAACCTA AAGGTTGATG GCTCGTTTGT TCGTAAAATT
ACGACTGAAT CAACTAATTA CCAGATCGTT AATACTATCA TTGCCCTAAA TAATCAACTA
GGACTAAAAG CGATCGCAGA GGGAATTGAA ACCCATGAGC AACTCGACCT ACTTAGTCAG
TTAGGCTACC AGTATGGCCA AGGATATCTC TTTGCTAGAC CCCTTAATGC CAAAGATGTT
GAGCAGCTTT TCTTGAGCAA TTAA
 
Protein sequence
MEQSSRQFFE QISREDWEQT PESVQQLVRA LLAESDLVTE ESEQASTGRL AIDQYFRESL 
RYQQVVEAQT DLILRSRSDT TVVFANKPLC QVLGWQDGDI SGQTWGNLVP PNDLSELHEK
IAGLSLENPT FESLNRNYGA DQRIKWIQWV NQGIFNDRGE LIEIQSVGRD VTTLIEQITR
EKTLNYVFEA IRNSLDLEVI FATATKELAK TLNGLDCYIV QYLEEQRIWT HVAEFQHDEN
QESRLGIEIQ DLDNPFAEQL KKFQVVRVEN TQNINDKINR ELAKSTPGAW LLVPLIVEEK
LWGSFTIVSN QKPFIWSDGY VDLARSISRQ LEIAIYQADL YQKIQQELSD RSKAELALQE
SQTRFQRIAD NLPGIIYGYK LRQDGTDQFT YISSGFREVY GIDPETALEN SNVVWGMIHP
EDIEYLKTSI IKSQQTLKTW KVEYRIITKN GELKWMQGRA RPTRQENGET FWDGLIIDIS
DRKKIEAELQ TSEERYRLLA ENMNDLVCLH QADGTYLYVS PSAEALLGFS SEEMVGQNPY
DFFHPEDCDR IRDEAHQAVL MGAELPIVYR MRKKLGGYIW FETLTKPIMD DQGVVIGLQT
TSRDVTQRIE IQNQLQYDAC HDSLTGLANR NLLIERLELS LKRSKRLQNY KYAVLFLDLD
RFKVINDSLG HITGDQLLVS IAQKLQSIIR SHDLAARLGG DEFVVLVEDI QTFDEPIKVA
ERILAAIQVP LELEERSIYT STSIGIVFGS HEYESATQLL RDADTAMYRA KSRGRARYEV
FDSAMHSQAL ARLHLENDLR QAIARQEFVL YYQPIIQLQT GKITGFEALI RWQHPTEGIK
LPIDLIPIAE ETGLITSIDY WVLNQACRQL SEWQASYSQA ADLSMSVNLS AQNLQHDHLM
DEIQSVLQAT KIKPGSLTLE ITESMLIENT DQTIQLLAAI NEQGIEISID DFGTGYSSLS
YLHKLPVNNL KVDGSFVRKI TTESTNYQIV NTIIALNNQL GLKAIAEGIE THEQLDLLSQ
LGYQYGQGYL FARPLNAKDV EQLFLSN