Gene Synpcc7942_1114 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSynpcc7942_1114 
SymbolrbgA 
ID3775064 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSynechococcus elongatus PCC 7942 
KingdomBacteria 
Replicon accessionNC_007604 
Strand
Start bp1131480 
End bp1132343 
Gene Length864 bp 
Protein Length287 aa 
Translation table11 
GC content58% 
IMG OID637799540 
Productribosomal biogenesis GTPase 
Protein accessionYP_400131 
Protein GI81299923 
COG category[R] General function prediction only 
COG ID[COG1161] Predicted GTPases 
TIGRFAM ID[TIGR03596] ribosome biogenesis GTP-binding protein YlqF 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value0.44359 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones31 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCGCTC CGCAAATTCA GTGGTATCCC GGTCACATTG CCAAGGCTGA ACGCCAGCTG 
CAGGAACAGT TAAAACGGGT CGATGTGGTC TTGGAAGTCC GGGATGCGCG GATTCCCCTC
GCGACCGATC ACCCGCGCCT GAAAAGCTGG CTGGGAAGTC GGGAGCGGTT GCTCATTCTT
AACCGCTTGG ACATGATTCC AGCACCAGCA CGACAGGCTT GGATCGACTG GTTTCGCAGC
CAAGGCGATC GCGTTTTATT GACTGATGCC CACGCGGGTA CTGGAGTGGC ACAGCTCTCG
CAAGCAGCTC AGGCAGCAGG AGCAGCCATG AATGCTCGCC GCAAGCAACG GGGAATGCTT
CCCCGCGCGG TACGCGCAGT GGTGATTGGC TTTCCCAACG TTGGCAAGTC GGCCCTGATC
AATCGCTTGG TGAAGAAAAA AGTCGTTGAA AGTGCTCGTC GTGCTGGTGT GACGCGATCG
CTGCGCTGGG TGCGGGTCAG TGAGCATTTG GATCTGCTAG ATGCCCCTGG AGTTCTGCCG
AGTCGGCTAG ATGATCAAAC AGCAGCCCTA AAGTTGGCGC TCTGTGATGA CATTGGCGAA
GCAGCCTACG ACAATCAACG GGTGGCAGCG GCTCTCGTCG ATTGCCTGCA AGCCCTGGAA
GCACAGCCCC TCAGTGGCGT GACCCCAACC CTCTTCTTCG ATCGCTATGG ATTGTCGGTC
GACGATACTG GCGAAGCCTA CCTCGCAGCC TTGGCCGATC ATCGTTGTCA GGGCGATCGC
GAGCGAACAG CCCTGATGCT GCTCAATGAT TTTCGGCGGG GCAGCCTTGG TCCGATCGCC
CTTGAACTTC CTCCAACGGC CTAA
 
Protein sequence
MSAPQIQWYP GHIAKAERQL QEQLKRVDVV LEVRDARIPL ATDHPRLKSW LGSRERLLIL 
NRLDMIPAPA RQAWIDWFRS QGDRVLLTDA HAGTGVAQLS QAAQAAGAAM NARRKQRGML
PRAVRAVVIG FPNVGKSALI NRLVKKKVVE SARRAGVTRS LRWVRVSEHL DLLDAPGVLP
SRLDDQTAAL KLALCDDIGE AAYDNQRVAA ALVDCLQALE AQPLSGVTPT LFFDRYGLSV
DDTGEAYLAA LADHRCQGDR ERTALMLLND FRRGSLGPIA LELPPTA