Gene Synpcc7942_1101 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSynpcc7942_1101 
Symbol 
ID3775051 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSynechococcus elongatus PCC 7942 
KingdomBacteria 
Replicon accessionNC_007604 
Strand
Start bp1118661 
End bp1119818 
Gene Length1158 bp 
Protein Length385 aa 
Translation table11 
GC content58% 
IMG OID637799527 
ProductPDZ/DHR/GLGF 
Protein accessionYP_400118 
Protein GI81299910 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones37 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones26 
Fosmid unclonability p-value0.280141 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACTGACA GCTTCTTCAA ACGAACCTTG GGGCTCGGCA GCCTAGTGCT GCTGGGCTTA 
GGGGGCTGTT CACAGGTGGC ACAGTTGCCT ACGCCTCCCA ATCCACTAGC GGTAAATCGC
AGCGAAGCAG CATCACCCAA TCGGCCCCCG TTACCCTTGC CTGAAAACGC CAACTTCATT
GTGGCGGCTG TCGAGCGGGA TGGCGCTGCC GTGGTTCGGA TCAATGCATC CCGCCGTGTC
AGCAATGGCG ATCCCTTCGG CGGCTTGTTT GGCGGCCCGC CGGCGGGTGG CAATCGCGTC
GAGCGGGGTT CCGGTTCTGG CTTCATCTTT GATAGTAATG GTCTGCTGAT GACCAATGCC
CACGTTGTGG AAGGAGCCGA TCGCGTTCAA GTGCGGCTCA AAGACGGCCG AACCTACGAT
GGCCAAGTCC TAGGTGCTGA CCCGGTTACG GATGTGGCCG TCGTCAAAAT TGATGCCAAG
GATTTACCGA CCGTCCGCAT TGGCAATTCC GATAACCTCC GTCCTGGCGA ATGGGCAATC
GCGATCGGTA ATCCCCTCGG TCTCGACAAC ACCGTGACGG TGGGCATTAT TAGCGCCACT
GGGCGTTCGA GTTCAGAAGT TGGGATTCCC GACAAACGGG TTGGCTTCAT TCAGACCGAT
GCTGCGATCA ACCCAGGCAA CTCTGGCGGT CCCCTCTTGA ATGCTGCTGG CGAAGTGATT
GGCATTAACA CCGCGATTCG TGCCGACGGT CAGGGAATTG GCTTCGCGGT ACCGATCAAC
ACGGCCCGCC GCATTGCAGA TCAAATTATT CAGACTGGCA AAGCCTCCCA CCCGCTCTTG
GGTGTTCAGA TGCTGCCGCT GACCCCGGAA ATTGCGCGCG AGAATAACCG TAATCCCAAC
GCCAGCATTG ATCTGCCGGA AACTGACGGT GCCTTAATTG TCCAAGTCTT GCCCAACTCT
CCAGCGGCGG CAGCCGGGAT CCGTCGAGGG GACGTGATTA CGGCGGCAGA AGGTCAGCCT
ATCCGCTCAG CTTCGGATCT CCAGACAGCC GTGGAGAAGA AAAAGGTGGG CGATCGCTTG
GCTCTGGAAC TGCTCCGTCA GCAACAGAAG CGGCAGGTGA CGGTTCAGCT GGCTGAAATT
CCCCAGCAAC AGGGCTAG
 
Protein sequence
MTDSFFKRTL GLGSLVLLGL GGCSQVAQLP TPPNPLAVNR SEAASPNRPP LPLPENANFI 
VAAVERDGAA VVRINASRRV SNGDPFGGLF GGPPAGGNRV ERGSGSGFIF DSNGLLMTNA
HVVEGADRVQ VRLKDGRTYD GQVLGADPVT DVAVVKIDAK DLPTVRIGNS DNLRPGEWAI
AIGNPLGLDN TVTVGIISAT GRSSSEVGIP DKRVGFIQTD AAINPGNSGG PLLNAAGEVI
GINTAIRADG QGIGFAVPIN TARRIADQII QTGKASHPLL GVQMLPLTPE IARENNRNPN
ASIDLPETDG ALIVQVLPNS PAAAAGIRRG DVITAAEGQP IRSASDLQTA VEKKKVGDRL
ALELLRQQQK RQVTVQLAEI PQQQG