Gene Synpcc7942_1055 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSynpcc7942_1055 
Symbol 
ID3773985 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSynechococcus elongatus PCC 7942 
KingdomBacteria 
Replicon accessionNC_007604 
Strand+ 
Start bp1066056 
End bp1066679 
Gene Length624 bp 
Protein Length207 aa 
Translation table11 
GC content60% 
IMG OID637799477 
Productphycocyanin alpha-subunit phycocyanobilin lyase 
Protein accessionYP_400072 
Protein GI81299864 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value0.0824539 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value0.0373773 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCACGG AATTGATCGC TGCTGTTGAA GCCGCTGATT CGGCGGAAGG ACTGGTGCGG 
GCGGTAGCGG CACTGTCGGC GGCTCGTACT GATGCGGCTA TCCCGACTTT GATTAGCGTT 
TTAGCGTTCA ACAACCCAGG GGCTGCGGTG GTTGCGGTCG ATGGTCTGAT TCAACTGGGT 
TCTCCAGCGG CACAAGCCAT TCTCAATAAT CTGGATGACT ATAACTACGG CGCAAGAGCT 
TGGGCTCTGC GCGCCTTAGC TGGCATTGGA GAACCGGCAG CCCTGCCCCT GCTCCTGTCA 
GCGGCGCGGG AAGATTTTTC GCTCAGTGTG CGGCGGGCGG CGACTTACGG CTTGGGGCGA 
GTGCGCTGGG CAGATCTGTC CGAGAGCGAT CGCCTTGCCC AACAACAGCA GTGCTATGAA 
ACCCTGAAGC TCTGCCTTCA GTACGATCCG GAATGGGTGG TGCGCTATGC AGCAGCAGCG 
GCACTGGAAA CCTTAGCTCC GGCTGCAACC CAGCTCCAGT CTGCGATTGC AGAAACTCTC 
AACCGGCAGG CTCACAGCGA TGAGGAACGA GCCGTTCAGG CGCGATCGCG TTTAGCCGAG 
CGACGCCTAG CCGCTGGTGT ATAA
 
Protein sequence
MSTELIAAVE AADSAEGLVR AVAALSAART DAAIPTLISV LAFNNPGAAV VAVDGLIQLG 
SPAAQAILNN LDDYNYGARA WALRALAGIG EPAALPLLLS AAREDFSLSV RRAATYGLGR 
VRWADLSESD RLAQQQQCYE TLKLCLQYDP EWVVRYAAAA ALETLAPAAT QLQSAIAETL 
NRQAHSDEER AVQARSRLAE RRLAAGV