Gene Synpcc7942_1052 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSynpcc7942_1052 
Symbol 
ID3773982 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSynechococcus elongatus PCC 7942 
KingdomBacteria 
Replicon accessionNC_007604 
Strand
Start bp1064073 
End bp1064594 
Gene Length522 bp 
Protein Length173 aa 
Translation table11 
GC content57% 
IMG OID637799474 
Productphycocyanin, beta subunit 
Protein accessionYP_400069 
Protein GI81299861 
COG category 
COG ID 
TIGRFAM ID[TIGR01339] phycocyanin, beta subunit 


Plasmid Coverage information

Num covering plasmid clones34 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value0.0614393 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACTTTTG ATGCTTTCAC CAAGGTGGTG GCACAAGCCG ATGCCCGTGG CGAATTTTTG 
AGCGACGCCC AACTGGACGC GCTGAGCCGC TTGGTTGCAG AAGGCAACAA ACGGATTGAT
ACGGTCAACC GCATCACCGG TAATGCTTCG TCGATCGTCG CTAACGCAGC GCGTGCATTG
TTTGCAGAGC AACCTTCTCT GATTGCTCCT GGCGGCAACG CATACACGAA CCGTCGGATG
GCGGCTTGTC TGCGCGACAT GGAAATCATT CTCCGCTACG TGACCTACGC GGTCTTCACC
GGCGATGCTT CCATTCTCGA CGACCGCTGT TTGAACGGTC TGCGTGAGAC CTACTTGGCT
CTGGGCGTGC CCGGTGCATC GGTGGCAGAA GGCGTTCGCA AGATGAAAGA CGCAGCTGTG
GCGATTGTGA GCGACCGCAA CGGCATCACC CAAGGTGACT GTTCAGCGAT CATTTCCGAG
CTGGGCAGCT ACTTCGACAA AGCTGCTGCT GCAGTTGCCT AG
 
Protein sequence
MTFDAFTKVV AQADARGEFL SDAQLDALSR LVAEGNKRID TVNRITGNAS SIVANAARAL 
FAEQPSLIAP GGNAYTNRRM AACLRDMEII LRYVTYAVFT GDASILDDRC LNGLRETYLA
LGVPGASVAE GVRKMKDAAV AIVSDRNGIT QGDCSAIISE LGSYFDKAAA AVA