Gene Synpcc7942_1039 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSynpcc7942_1039 
Symbol 
ID3773969 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSynechococcus elongatus PCC 7942 
KingdomBacteria 
Replicon accessionNC_007604 
Strand
Start bp1053877 
End bp1054353 
Gene Length477 bp 
Protein Length158 aa 
Translation table11 
GC content49% 
IMG OID637799461 
Producthypothetical protein 
Protein accessionYP_400056 
Protein GI81299848 
COG category[S] Function unknown 
COG ID[COG3558] Uncharacterized protein conserved in bacteria 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones46 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones29 
Fosmid unclonability p-value0.677987 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCACTG ATGCCCCCCG TCCACCGCTG CCGCCGTTTA CTGCGGAGAC AGCTGCCCAG 
AAAGTTCGTA TGGCGGAAGA TGCTTGGAAC CATCGCGATC CAGAGCGAGT TTCCTTGGCC
TATAGCCCCA ACAGTGTTTG GCGCAATCGA GCTGAATTTT TGCAGGGGCG CGAAGATATC
AAAGCCTTCT TAATTCGCAA GTGGAACAGA GAGCTAGACT ATCGCCTAAT TAAAGAAGTT
TGGGCTTGGC ATGACAATCG AATTGCTGTT CGTTTCGCCT ACGAATATCA CGATGATTCT
GGTCAGTGGT ATCGAGCTTA TGGCAATGAA AATTGGGAAT TTGATGAACT GGGCCTGATG
AAGCGACGCA TCGCTAGTAT TAATGACTTG GTAATTTCAG AAAGCGATCG CAAATATCAT
TGGCCTTTAG GCCCCCGACC GCTTGATCAT CCGGGCTTGA GTGATCTTGG CCTCTAG
 
Protein sequence
MSTDAPRPPL PPFTAETAAQ KVRMAEDAWN HRDPERVSLA YSPNSVWRNR AEFLQGREDI 
KAFLIRKWNR ELDYRLIKEV WAWHDNRIAV RFAYEYHDDS GQWYRAYGNE NWEFDELGLM
KRRIASINDL VISESDRKYH WPLGPRPLDH PGLSDLGL