Gene Synpcc7942_1010 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSynpcc7942_1010 
Symbol 
ID3773938 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSynechococcus elongatus PCC 7942 
KingdomBacteria 
Replicon accessionNC_007604 
Strand
Start bp1021969 
End bp1022700 
Gene Length732 bp 
Protein Length243 aa 
Translation table11 
GC content58% 
IMG OID637799430 
Productribosomal large subunit pseudouridine synthase B 
Protein accessionYP_400027 
Protein GI81299819 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases 
TIGRFAM ID[TIGR00093] pseudouridine synthase 


Plasmid Coverage information

Num covering plasmid clones32 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones33 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCCGAAC GGCTGCAGAA GATTTTGTCG CAATTGGGTG TCGCCTCCCG ACGACAGGCG 
GAACAGTGGA TCCAACAAGG ACGAGTTACG ATCAATGGCC GCGTCGCTGA AATTGGCCAG
CAGGCTGACC TCAAGCGCGA TCGCATTCAC TTGGATGGCA AACGGCTACG CCCCAAGCAT
CGGCCCGAGG CCCGTTATCT GCTGCTCCAT AAACCTGTGG GTGTAGTCTC CACCTGCCGT
GATCCGCAGC GGCGGCGCAC CGTCATTGAT CTCGTCGATC CAGAATTTCG GCCGGGGCTG
CATCCGGTGG GACGGCTGGA TACCGATAGC AGCGGCTTGC TCTTACTCTG CAATGACGGC
GAACTGACCT ATCAAATCAG CCATCCCCGC TTTCACATCG AGAAAACCTA TCGCGTTTGG
GTCGAAGGTC ATCCGCCAGC CTCGGTGCTA GAGCACTGGC GATCGGGGGT TTGGCTAGAC
GACTATCAAA CGCTGCCGGC AGGTGTGCGA ATCCTGCACG ATCGCGCTGA ATCGACGCTG
CTCGAAGTGA TTTTGCACGA AGGCCGAAAT CGGCAAATTC GTCGGGTTGC CGAGCAGTTG
GGGCATCCAG TTTTACGCCT GACCCGAGTC GCGATCGGGC CATTGCGTTT GGGATCGTTA
CAGCCAGGGG AGTATCGTTC TTTAACGGCG GCCGAAGTTT ATCGCCTCCG TCAGCTCGCA
CAAGGAACCT GA
 
Protein sequence
MAERLQKILS QLGVASRRQA EQWIQQGRVT INGRVAEIGQ QADLKRDRIH LDGKRLRPKH 
RPEARYLLLH KPVGVVSTCR DPQRRRTVID LVDPEFRPGL HPVGRLDTDS SGLLLLCNDG
ELTYQISHPR FHIEKTYRVW VEGHPPASVL EHWRSGVWLD DYQTLPAGVR ILHDRAESTL
LEVILHEGRN RQIRRVAEQL GHPVLRLTRV AIGPLRLGSL QPGEYRSLTA AEVYRLRQLA
QGT