| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Synpcc7942_1006 |
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| Symbol | |
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| ID | 3773934 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Synechococcus elongatus PCC 7942 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007604 |
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| Strand | + |
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| Start bp | 1017044 |
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| End bp | 1018123 |
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| Gene Length | 1080 bp |
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| Protein Length | 359 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 637799426 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_400023 |
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| Protein GI | 81299815 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG5010] Flp pilus assembly protein TadD, contains TPR repeats |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 0.476893 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTTGCTC GTCTTGGAGC CAGACTGGCG ATTGGCGTGA TGGTACTGGG TAGCCCCGCG
ATCGTCTCTG TTAGCGCTCA GCCTGCTCAA GCTGCTGTCC CTAATCCAGA ACTGAGTCGC
CTCTTGGATG CTGGCAGCGA AGCGGTGAAA CAACGGCGCT GGGCTGAGGC ATTAGGGCTG
TATCAACAAG CCCAGTTAAT CGATGGTCAA GATGCTCGTA TTGCCTCTGC GATCGGCTAT
CTCTACACCG AACTCGGAGA TTTTCGCCAA GCAGCCCTTT CTTTTGAACG GGCGATCGCA
ATGGATAGTC AAACTGCTGC GTTTGCCTTT GGAGCAGCTA CGGCCTATGC CAATTTGGGT
GAGTACGCAG CCGCTGAACG CTACTATGAG CAATCGCTGC GATTGGACAA CAAGCGAGCC
GAAGCCTATC GAGGCTTAGC CACCGTTCAG CAACGGCGGG GCAATTTAGT GGGTGCAATT
AACACCTACC AGCGCTGGCA ACAACTTGAG CCGAACAACT GGCAACCCCG CAATGAAATG
GGGAAAATTT ATCTGCAGCA GCGCCAGTTC ACGAACGCGC TACAAGTATT GCAAGCTGCA
ACACGACTGG CCCCTCGTGA AGCAGATATC TACTCGAATT TGGCGATCGC TCAACTCGGG
CTGAACAACC CTCGGGCTGC CCTAACATCT TTACAATCCA GTATTAGTCT TGATCCCCGT
AATCCTCGCA CGCTGCTCAA AGCAGGAGAT ATCTATCTGG TTTTAGGCGA TCGCGAGGCG
GCAAATCGTA ACTATCGTCG CGCTTTTGAA CTCAATCGCA ATTCTGCTAA AACTCTCGAT
CGCTATACTC AAATCCTGCT TGATCAAGGA GACGCAACAC TCGCTACAGT CTATCTTCGC
GATGCCTTAC GTCTTGAGCC CCGCAATCCG GACTTTCACT TGCGGCTAGG ACTTGCTTAC
CTAGCACGCG GTTTGAAACC AGAAGCAAGA TCATCACTTA ATCAAGCGGC GTTACTCTAT
CAACAAAGAG GCGATTCTAA CGGACAACAA CAAGCGGCAG CTGCACTGCG ACAGCTCTAG
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| Protein sequence | MLARLGARLA IGVMVLGSPA IVSVSAQPAQ AAVPNPELSR LLDAGSEAVK QRRWAEALGL
YQQAQLIDGQ DARIASAIGY LYTELGDFRQ AALSFERAIA MDSQTAAFAF GAATAYANLG
EYAAAERYYE QSLRLDNKRA EAYRGLATVQ QRRGNLVGAI NTYQRWQQLE PNNWQPRNEM
GKIYLQQRQF TNALQVLQAA TRLAPREADI YSNLAIAQLG LNNPRAALTS LQSSISLDPR
NPRTLLKAGD IYLVLGDREA ANRNYRRAFE LNRNSAKTLD RYTQILLDQG DATLATVYLR
DALRLEPRNP DFHLRLGLAY LARGLKPEAR SSLNQAALLY QQRGDSNGQQ QAAAALRQL
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