Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Synpcc7942_0962 |
Symbol | |
ID | 3775350 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Synechococcus elongatus PCC 7942 |
Kingdom | Bacteria |
Replicon accession | NC_007604 |
Strand | - |
Start bp | 969968 |
End bp | 971323 |
Gene Length | 1356 bp |
Protein Length | 451 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 637799381 |
Product | sun protein |
Protein accession | YP_399979 |
Protein GI | 81299771 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0144] tRNA and rRNA cytosine-C5-methylases |
TIGRFAM ID | [TIGR00446] NOL1/NOP2/sun family putative RNA methylase [TIGR00563] ribosomal RNA small subunit methyltransferase RsmB |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 0.316292 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 27 |
Fosmid unclonability p-value | 0.597237 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | TTGCCTCGCC CCAGTCGGGG GAATGCCCGT TGGGTAGCAT TTCAAACCCT GACAACGATT CGTGAGGGGG CGTTTGCAGA TCTGGCCCTC GATCGCCATC TGCAGCGCTC GGGCTTAGTT GGGGCCGATC GCCGCTTGGT GACGGAACTG GTCTACGGCT GTGTGCGGCG GCAGCGCACC TTGGATGCCC TGATTGACCT GCTGGCCCAA CGACCTGCAG CCCAGCAACC GCCGGTGTTG CGGACAGTGT TGCAACTGGG GCTCTACCAA TTGCGCTACC TCGAGCAGAT TCCGACAGCG GCGGCTGTGG CGGAAACTGT GCAGCTTGCC AAGCAACTGG GTTTGGGTGG TCTGTCTGGA GCCGTCAACG CCATTTTGCG CCAGTATCTC CGCCAATCTG AGGAACGCGA TCCGCTGCCG CTCCCGAGTG ATCCGATCGC GGCTTTAGCG ATTCATCAAA GCTTTCCCGA CTGGCTAGTC CAGCTCTGGA GCGATCGCCT GGGCTTGGAC GAAGCCGAAT TTCTCTGCCA CTGGTTCAAC CAGCCACCCA GCATCGACCT GCGAATCAAT CCGCTCCGGA CTGAGCGATC GCAAGTGCAA GCTGCGTTAG AAGCCGTAGG GATTCGCAGT ACGCCCGACC CGCAACTGCC CCAAGCCCTG CGACTAATCG ACCCGCCCGG CCCAATTCGA CAGCTTCCAG GCTTTGACGA AGGCTGGTGG ATGGTCCAAG ACAGCAGCGC TCAACTGATT GCCCATCTAG TTGATCCGCA GCCGGGTGAA ACGGTGTTGG ATGTCTGTGC CGCGCCGGGG GGGAAATCAA CCCACTTGGC GGAATTGATG GGCGATCGCG GTCAAGTGAT TGCCTGCGAT TCATCCGCCA AGCGCCTGCG CAAGGTACAA GAAAATGCCC AGCGTCTGCA GTTGAGCAGC ATCACCACTC GCGCGATCGA TGGCCGTCAG ATCAAGGGTA TTCAGGCCGA TCGCATTTTG GTCGATGCCC CCTGTTCAGG TTTAGGGACA CTTCATCGTC ATGCCGATGG CCGTTGGCGG CAGAGTCCTG ACAGTGTGGC GGAACTGGCG CAGTTACAGT CTGAAATTCT GGACGCTGCA GCGGCTTGCC TAAAACCGGC GGGAACTTTG GTCTACGCCA CTTGCACGCT TCATCCTGCG GAGAATGAGG CAGTGATTGA GCAGTTTTTG CAGCGCCATC CCGACTGGCA GATGGCTCCC TTAGCGGCTG ATAGTCCCTT CCAAGCTTGG GCAGAGGCCA ACGGCACTCT GCGGATTTGG CCACATCGTC ACGATCGCGA TGGCTTTTTT GGGGCACGAC TGCAGCGATC GCCCGCCCGT GACTAG
|
Protein sequence | MPRPSRGNAR WVAFQTLTTI REGAFADLAL DRHLQRSGLV GADRRLVTEL VYGCVRRQRT LDALIDLLAQ RPAAQQPPVL RTVLQLGLYQ LRYLEQIPTA AAVAETVQLA KQLGLGGLSG AVNAILRQYL RQSEERDPLP LPSDPIAALA IHQSFPDWLV QLWSDRLGLD EAEFLCHWFN QPPSIDLRIN PLRTERSQVQ AALEAVGIRS TPDPQLPQAL RLIDPPGPIR QLPGFDEGWW MVQDSSAQLI AHLVDPQPGE TVLDVCAAPG GKSTHLAELM GDRGQVIACD SSAKRLRKVQ ENAQRLQLSS ITTRAIDGRQ IKGIQADRIL VDAPCSGLGT LHRHADGRWR QSPDSVAELA QLQSEILDAA AACLKPAGTL VYATCTLHPA ENEAVIEQFL QRHPDWQMAP LAADSPFQAW AEANGTLRIW PHRHDRDGFF GARLQRSPAR D
|
| |