Gene Synpcc7942_0942 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSynpcc7942_0942 
Symbol 
ID3775329 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSynechococcus elongatus PCC 7942 
KingdomBacteria 
Replicon accessionNC_007604 
Strand
Start bp947957 
End bp949849 
Gene Length1893 bp 
Protein Length630 aa 
Translation table11 
GC content58% 
IMG OID637799360 
ProductFtsH peptidase 
Protein accessionYP_399959 
Protein GI81299751 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG0465] ATP-dependent Zn proteases 
TIGRFAM ID[TIGR01241] ATP-dependent metalloprotease FtsH 


Plasmid Coverage information

Num covering plasmid clones29 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones32 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAATGGA ACTGGCGCAC CCTGGCACTC TGGACTCTGC CGATCCTGGT CATCGGCTTT 
TTCGTCTGGC AAGGGGGCAT TGGGGCGAAC CTGCAAACCA ATAGCACCAT CAATGCGGCC
AGCACCCGCA TGACCTACGG TCGCTTCTTG GAATACCTCG ATGCGGGCCG AGTCACGGCA
GTTGATTTTT ATGAAGGCGG CCGCACGGCG ATCGTCGAGG CCGTTGACCC TGACCTCGAT
AACCGGCTGC AACGCCTCCG CGTCGATCTG CCTGGCACGT CTCCCGATTT GATCACGCGC
CTGCGCGACA GCGACATTAA CTTCGACGTC CACCCACCGC GCAACGATGG CGCGATCTGG
GGTCTGCTCA GCAACCTGAT CTTTCCGATC CTGCTGATCG TCGGTTTGTT CTTCCTGTTC
CGTCGCTCTG GCAACGTGCC GGGTGGCCCC GGTCAAGCGA TGCAGTTCGG CAAATCGAAA
GCCCGCTTCC AAATGGATGC CAAAACCGGC GTGCTGTTTG ACGATGTCGC TGGCATCGAA
GAAGCCAAGG AAGAGCTGCA AGAAGTGGTG ACCTTCCTGA AAAACTCCGA GCGCTTCACC
GCAGTCGGTG CCCGTATTCC TAAAGGCGTC TTGCTGGTTG GCCCTCCGGG GACGGGTAAA
ACCCTGTTGG CTAAAGCGAT CGCGGGTGAA GCAGGTGTTC CTTTCTTCAG CATCTCCGGT
TCAGAATTCG TGGAAATGTT TGTGGGTGTC GGTGCCAGCC GCGTCCGCGA CCTGTTCAAG
AAAGCCAAAG AAAACGCACC TTGCATCGTC TTCATCGATG AAATTGACGC CGTCGGCCGT
CAGCGTGGCG CCGGTATTGG CGGTGGTAAC GACGAGCGGG AACAAACCCT CAACCAGTTG
TTGACCGAAA TGGACGGTTT TGAGGGCAAC ACCGGCATTA TCATCATCGC GGCCACCAAC
CGCCCCGATG TCTTGGATGC AGCGCTGACC CGTCCTGGCC GTTTCGATCG CCAGATCATC
GTTGATGCAC CGGACATCAA AGGCCGTCTG GAAATCCTCA AGGTTCACGC CCGTAACAAG
AAACTGGCGG AAGATGTCTC CCTGGATGTG ATCGCCCGCC GGACGCCGGG TTTCGCCGGT
GCTGATTTGG CCAACCTGCT GAACGAAGCC GCAATTTTGA CTGCCCGTCG ACGTAAAGAT
GCGATCACGC TGACGGAAAT TGATGACGCC GTCGATCGCG TCGTCGCCGG TATGGAAGGT
ACGCCGCTGG TCGATGGCAA GAGCAAGCGC TTGATTGCTT ACCACGAGGT GGGTCACGCG
ATCGTGGGCA CCTTGGTCAA AGACCATGAC CCGGTTCAGA AAGTGACGCT GATTCCTCGC
GGCCAAGCTC AAGGTCTGAC CTGGTTCGCG CCGGATGAAG AGCAAGGCTT GACCTCGCGG
GCGCAAATTC TGGCTCGGAT TAAAGGCGCC CTCGGCGGCC GGGCTGCGGA AGATGTGATC
TTTGGCCATG ACGAGGTGAC CACCGGTGCA GGCAATGACT TGCAACAGGT GACGGGCATG
GCGCGTCAGA TGGTGACTCG CTTTGGCATG TCGGATCTGG GGCCGCTGTC GCTGGAAGGT
CAAAGTCAAG AGGTGTTCTT GGGCCGCGAT CTGATGACGC GATCGGAATA CTCGGAGCGG
ATTGCCATCC GCATTGATGC CCAGGTTCAT GACATCGTCG ACCACTGCTA CCAAGAAACG
CTGCAGTTGA TTCGCGACAA CCGCATCGTG ATCGATCGCC TCGTCGATCT GCTGATTGAA
AAAGAAACGA TCGACGGCGA TGAATTCCGT CAGATTGTGG CTGAGTACTG CCAAGTCCCT
GAGAAAGAAC GATTTGTGCC TCAGCTGATC TAG
 
Protein sequence
MKWNWRTLAL WTLPILVIGF FVWQGGIGAN LQTNSTINAA STRMTYGRFL EYLDAGRVTA 
VDFYEGGRTA IVEAVDPDLD NRLQRLRVDL PGTSPDLITR LRDSDINFDV HPPRNDGAIW
GLLSNLIFPI LLIVGLFFLF RRSGNVPGGP GQAMQFGKSK ARFQMDAKTG VLFDDVAGIE
EAKEELQEVV TFLKNSERFT AVGARIPKGV LLVGPPGTGK TLLAKAIAGE AGVPFFSISG
SEFVEMFVGV GASRVRDLFK KAKENAPCIV FIDEIDAVGR QRGAGIGGGN DEREQTLNQL
LTEMDGFEGN TGIIIIAATN RPDVLDAALT RPGRFDRQII VDAPDIKGRL EILKVHARNK
KLAEDVSLDV IARRTPGFAG ADLANLLNEA AILTARRRKD AITLTEIDDA VDRVVAGMEG
TPLVDGKSKR LIAYHEVGHA IVGTLVKDHD PVQKVTLIPR GQAQGLTWFA PDEEQGLTSR
AQILARIKGA LGGRAAEDVI FGHDEVTTGA GNDLQQVTGM ARQMVTRFGM SDLGPLSLEG
QSQEVFLGRD LMTRSEYSER IAIRIDAQVH DIVDHCYQET LQLIRDNRIV IDRLVDLLIE
KETIDGDEFR QIVAEYCQVP EKERFVPQLI