Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Synpcc7942_0876 |
Symbol | alaS |
ID | 3774053 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Synechococcus elongatus PCC 7942 |
Kingdom | Bacteria |
Replicon accession | NC_007604 |
Strand | + |
Start bp | 877976 |
End bp | 880675 |
Gene Length | 2700 bp |
Protein Length | 899 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 637799292 |
Product | alanyl-tRNA synthetase |
Protein accession | YP_399893 |
Protein GI | 81299685 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0013] Alanyl-tRNA synthetase |
TIGRFAM ID | [TIGR00344] alanine--tRNA ligase |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.27264 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 0.0167096 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGCCCCCCA AGCAATACGG CATGATGGGT TTAATCTGCT CCCTGTCGTT TATTTCGCTT CGGCAATCCA TGGCTGCCCC TGCTCTTAGC GGTGATCAAA TCCGCGAAAC CTTTCTGAAA TTCTTTGAAG GCAAGGGGCA CCGTCGCCTA CCCAGTGCCT CGCTGATCCC TGAAGATCCA ACGGTCTTGC TGACGATCGC AGGCATGTTG CCGTTCAAGC CGATCTTCCT CGGGCAGCAG GTCGCGGAAG TGCCACGGGC CACAACGTCG CAAAAGTGCA TTCGCACCAA CGATATCGAG AATGTGGGTC GCACGGCTCG CCACCACACC TTCTTTGAAA TGCTGGGCAA CTTCAGCTTC GGCGACTATT TCAAGAAAGA AGCGATCGCC TTTGCTTGGG AACTCGTCAC GGAAGTGTTT CAAGTGCCGG CGGAACGGCT AGCGGTTAGT GTCTTTGAAG AAGACGACGA AGCCTTTGCG ATCTGGCGCG ATCAAATTGG TGTGCCAGAA GCACGGATCC AACGACTGGG CGCTAAAGAT AATTTCTGGG CTTCCGGCCC GACGGGTCCC TGTGGCCCCT GCTCCGAGAT CTATTACGAC TTCCATCCCG AGCTGGGCAA TGACGGCCTG GATCTGGAAG ATGACAGCCG CTTCATCGAG GTCTACAACC TCGTGTTCAT GCAGTACAAC CGCGATGCAG CGGGCAATCT GACGGCGCTG GAGAAGCAGA ATATCGATAC GGGCATGGGG CTGGAGCGCA TGGCTCAAGT CCTGCAAGGC GTGCCCAATA ACTACGAAAC CGACCTGATT TTCCCGATCA TTCAAGCGGT GGCTGCGATC GCCCAGCGAG ACTACGCCAG CGAGTCGGAA TCGGTCAAAG TCTCGCTGAA AGTGATCGGC GATCACCTGC GTGCCGTCAC TCATTTGATT GCCGATGGTG TCACGGCTTC CAACCTCGGG CGCGGCTATG TGCTGCGGCG ACTGATTCGG CGCGTGGTGC GCCATGGTCG CTTGATTGGC ATCGATCGCC CCTTTACGGC GGAGATTGCC GAAACTGCGA TCGCTTTAAT GGCCGCGCAA TATCCCAACC TGCGGGAACG GGAAGCGGCG ATTAAAGCAG AACTGACGCG GGAAGAACAG CGCTTTTTGG AAACCTTGGA GCGCGGCGAA AAACTGCTGG CGGAACTGCT GGCTGCCGCC ACCGATCAGA TTCGCGGCGA GGATGCCTTC GTCCTTTACG ACACCTACGG CTTCCCGCTG GAACTGACCC AAGAGATTGC CGAAGAAAAA GGACTGACCG TCGATCTGGC TGGTTTTGAA GCGGCGATGG CCGCCCAACG CCAGCGATCG CAAGCTGCCC ACGAAACGAT CGACCTGACG GTGCAAGGGT CGCTCGATCG CCTTGCGGAA CAGATTCACC CGACTGAGTT TGTCGGCTAC GGCGACGCGG TTGCCACGGC GAAAGTCACA GCGCTCCTCC GCGAAGGCCA AAGTGTTGAG GCCGCAGAAG CGGGCGATCG CGTTCAGATC GTGCTCGATC ACACGCCGTT TTATGCGGAA TCCGGCGGTC AAGTTGGCGA TCGCGGTGTC CTCACGGGCG AATCGTTGAT TGTTCGGATC GAAGATGTCC AGAAAGAATC AGGTTTCTTC GTCCACTACG GCCAGATTGA GCGGGGTTTG CTGCAAGTTG GCGATAGCGT TACGGCGCAA ATCGATCGCG CCTGCCGTCG CCGCGCCCAA GCCAATCACA CCGCTACGCA CCTGCTGCAA GCAGCCTTGA AGCTGATTGT CGATGAAGGC ATTTCCCAAG CGGGTTCGCT GGTTGCTTTC GATCGCCTAC GCTTCGACTT CAACTGTCCG CGAGCCGTGA CACCGGAAGA GCTGCGCCAA ATCGAAGACC AGATCAACCA GTGGATTGCT GAAGCTCACG GCACCGTGGT CGAGGTGATG CCGATCGCGA CGGCCAAAGC CAAAGGCGCG GTCGCCATGT TCGGCGAAAA ATACGGTGCG GAAGTCCGCG TCATTGACGT GCCTGGCGTC TCGATGGAGC TGTGCGGCGG CACCCACGTC GCCAATACCG CCGAGATTGG CCTGTTCAAG ATCATCAGCG AAGCGGGTGT CGCTTCCGGC GTGCGACGGA TTGAAGCGGT GGCTGGCCCT GCCGTGCTGG AATACCTCAA CGTCCGCGAT GCCGTTGTCC GCGACTTGAG CGATCGCTTC AAGGCCAAAC CCGAGGAACT GAGCGATCGC GTTACGGCGC TGCAAGAGGA GTTGAAAGCC AATCAGAAGC AGCTAACCGC GCTAAAAGCT GAACTGGCGA TCGCCAAATC CGATGCGCTG GTGTCCCAAG CGATCCCAGT CGGTGACGCG CAAGTCTTGG TTGAAACCCT GACCGGTGTG GATGCAGCCG CTCTGCAAAC CGCAGCGGAA CGACTCCAGC AAAAACTCGG CGATGCCGGT GCCGTTGTCC TCGGTTCTAG TCCTGAAGAA GGCAAAGTAA CGCTAGTCGC AGCCTTTGGT CCCGCGATCA TCGCCAAAGG ACTGAAAGCG GGTCAGTTCA TCGGCGGCAT TGCCAAAATC TGTGGTGGCG GTGGTGGCGG TCGTCCCAAC TTGGCGCAAG CCGGTGGCCG TGATGCCAGC AAGCTACCAG AAGCCATCGC AGCAGCCCTC GATCAGCTCA AGACTGCGAT CGCTAGCTAA
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Protein sequence | MPPKQYGMMG LICSLSFISL RQSMAAPALS GDQIRETFLK FFEGKGHRRL PSASLIPEDP TVLLTIAGML PFKPIFLGQQ VAEVPRATTS QKCIRTNDIE NVGRTARHHT FFEMLGNFSF GDYFKKEAIA FAWELVTEVF QVPAERLAVS VFEEDDEAFA IWRDQIGVPE ARIQRLGAKD NFWASGPTGP CGPCSEIYYD FHPELGNDGL DLEDDSRFIE VYNLVFMQYN RDAAGNLTAL EKQNIDTGMG LERMAQVLQG VPNNYETDLI FPIIQAVAAI AQRDYASESE SVKVSLKVIG DHLRAVTHLI ADGVTASNLG RGYVLRRLIR RVVRHGRLIG IDRPFTAEIA ETAIALMAAQ YPNLREREAA IKAELTREEQ RFLETLERGE KLLAELLAAA TDQIRGEDAF VLYDTYGFPL ELTQEIAEEK GLTVDLAGFE AAMAAQRQRS QAAHETIDLT VQGSLDRLAE QIHPTEFVGY GDAVATAKVT ALLREGQSVE AAEAGDRVQI VLDHTPFYAE SGGQVGDRGV LTGESLIVRI EDVQKESGFF VHYGQIERGL LQVGDSVTAQ IDRACRRRAQ ANHTATHLLQ AALKLIVDEG ISQAGSLVAF DRLRFDFNCP RAVTPEELRQ IEDQINQWIA EAHGTVVEVM PIATAKAKGA VAMFGEKYGA EVRVIDVPGV SMELCGGTHV ANTAEIGLFK IISEAGVASG VRRIEAVAGP AVLEYLNVRD AVVRDLSDRF KAKPEELSDR VTALQEELKA NQKQLTALKA ELAIAKSDAL VSQAIPVGDA QVLVETLTGV DAAALQTAAE RLQQKLGDAG AVVLGSSPEE GKVTLVAAFG PAIIAKGLKA GQFIGGIAKI CGGGGGGRPN LAQAGGRDAS KLPEAIAAAL DQLKTAIAS
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