Gene Synpcc7942_0824 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSynpcc7942_0824 
Symbol 
ID3776002 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSynechococcus elongatus PCC 7942 
KingdomBacteria 
Replicon accessionNC_007604 
Strand
Start bp818189 
End bp819895 
Gene Length1707 bp 
Protein Length568 aa 
Translation table11 
GC content55% 
IMG OID637799241 
Producthypothetical protein 
Protein accessionYP_399843 
Protein GI81299635 
COG category[S] Function unknown 
COG ID[COG2898] Uncharacterized conserved protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value0.896168 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones44 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACTATCG TGTGGTCCCA AATTAAACAT TTCCCACCGA TCGCAGGGCT GCGATCGCCC 
GCTGTGCGAG TGCGTTGGAT TGCTGTGCTG ACGGCGATCG CGGGCAGCCT GAATTTACTC
GTGGCAGTGT TGCCGCATCT GCCTGAGCGA TCGCGCTGGC TAGGACAACT GGCTACTTTG
ACCGTTGAAA CGCAAGGGCG AGTCGCTGGA GCTGTCATTG GCTTTATTTT GCTGACCCTA
GCCAATCAGC TATTGCGCCG CAAGCAGGTC GCTTGGCTGC TGACGGTGCT GCTTTTAAGT
CTCTCGGTTG CCCTCAAAGG CGTGCGAGCC CACCATCCAG CTTTGATTGC TCTCGACCTG
ATCTTGCTGG GTTGCTTGGT CGGCGATCGC AAGATCTACA TCGCGCGCTC GGATGCGCCG
TCGCGGGTGC GAGCGGTGCG GGTACTGTTG GGGGCGCTGC TGTTCAGTTT GGCCTACGGC
ACCTTGGGGC TGTTTTGGCT CGATCGCCAC TACTCCCGCG ACTTCGATCT ATTCACGGCT
CTTCAACAGG TGTTGCAGCT ATTTTTTAGC TGGGATGCCC GTGTGGCATT GCCCCAAACA
CGGTTTGGTC AACTGTTTGC GGAATCAATT TTTAGCGTCG GGCTACTGAC GCTTGGCTAT
GCCTTTTTGT TATTGCTACA ACCTGTTTGG CAACCACCGG CGACGGTGAC AGAACGACGG
CAGGCGACCG CGATCGTGCG GGCCCATGGC CATACCTCTC TGGCGCGGTT GACGTTGCTG
GAGGACAAAT CCTACTGCTT TAGTCCCAGC GGTGAGAGTC TGATTGCGTT TGTGCAACGG
GGGCGGGGAG CGATCGCCTT GGGTGATCCA ATTGGTCCTG CCCGCGATCG CGAGGCGATC
ATTCAGCAGT TTTTGCGGGA ATGTCAGCAG AACGATTGGT TGCCTGCGTT CTATCAGGTT
CTACCCGATG ACTTGCCGCT CTATCAGCGT CAGGGCCTAG CCTCGGTTCA AATTGGTCAA
GAAGCCGTCA TCCCTCTGCA AGACTTTAGC CTACAGGGCA AACGAGGGCG GGGCTTCCGC
AGTACCCTCA GTCGTTTGGA ACGAGCTGGC TACCGCTTTG AGGTGATTCC AGCCGCAGAA
ACATACCCCT TGCTACCTGA ATTGCGTTTC GTCAGCGATA CGTGGCTGAA GCGGATGAAA
GGGCCAGAAA AACGCTTTTC GGTAGGCTGG TTTGATCGCG ATTACCTCAC CAGTGGCAGC
ATTGCTGTCG TGCGATCGCA GGATGGCCAA ATTCAAGCGT TTGCCAACTG GGTTGAAGAA
TTTCAGCGCA ATGAACTGAC GCTCGATTTA ATTCGCTTTT TGCCCAGTGC TGAAAGCAGC
ACGATGGAGT TTTTACTTGT CAATACGATT TTGGCTGCTA AGGATCGAGG CTTTGATAGC
TTCAGCTTAG GACTCTCGGC TCTTTCTGGT TTGGATCAAC TCGATCAACC GAATCAAGTG
GAACAGGGCT TAGATTACCT CTATCGCCAC CTCGATCGCT TCTATCGCTT TCAAGGACTG
CACAGCTTCA AAGAGAAGTT CCATCCCGAC TGGCAGCCAC GCTACTTTGT CTATCCCAAC
TTGGCTGCTA TCCCGAGCCT AGTAGTCACC TTGGTTCGAG CAGATTCTGG CGATCGCTGG
CTCGATTACT TCCGAGCTAA TGACTGA
 
Protein sequence
MTIVWSQIKH FPPIAGLRSP AVRVRWIAVL TAIAGSLNLL VAVLPHLPER SRWLGQLATL 
TVETQGRVAG AVIGFILLTL ANQLLRRKQV AWLLTVLLLS LSVALKGVRA HHPALIALDL
ILLGCLVGDR KIYIARSDAP SRVRAVRVLL GALLFSLAYG TLGLFWLDRH YSRDFDLFTA
LQQVLQLFFS WDARVALPQT RFGQLFAESI FSVGLLTLGY AFLLLLQPVW QPPATVTERR
QATAIVRAHG HTSLARLTLL EDKSYCFSPS GESLIAFVQR GRGAIALGDP IGPARDREAI
IQQFLRECQQ NDWLPAFYQV LPDDLPLYQR QGLASVQIGQ EAVIPLQDFS LQGKRGRGFR
STLSRLERAG YRFEVIPAAE TYPLLPELRF VSDTWLKRMK GPEKRFSVGW FDRDYLTSGS
IAVVRSQDGQ IQAFANWVEE FQRNELTLDL IRFLPSAESS TMEFLLVNTI LAAKDRGFDS
FSLGLSALSG LDQLDQPNQV EQGLDYLYRH LDRFYRFQGL HSFKEKFHPD WQPRYFVYPN
LAAIPSLVVT LVRADSGDRW LDYFRAND