| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Synpcc7942_0649 |
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| Symbol | |
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| ID | 3775632 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Synechococcus elongatus PCC 7942 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007604 |
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| Strand | - |
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| Start bp | 642767 |
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| End bp | 643966 |
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| Gene Length | 1200 bp |
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| Protein Length | 399 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 637799061 |
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| Product | RNA polymerase sigma factor RpoD |
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| Protein accession | YP_399668 |
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| Protein GI | 81299460 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02997] RNA polymerase sigma factor, cyanobacterial RpoD-like family |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 38 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGCAGC TGATTTCAAT CGATAAGGAG CAAGAGGAAG CCGGCATGAC TCAGGCCACC
GAACTACTCG ACCCCGCGCT CAAACCGGCG GAAACAAAGG CCAAACGGAG TAGTCGCAAA
AAAGCGACAA CTGCTGTTGT TGAGCCCGCA ACCACGATCG CTCCGACTGC AGATGTCGAC
GCGATCGACG ACGAGGATTC GGTTGGTGAG GATGAAGATG CGGCGGCCAA AGCCAAAGCT
AAAGTCCGCA AAACCTATAC AGAAGACTCA ATTCGGCTCT ATCTCCAAGA GATTGGTCGA
ATTCGGTTGC TGCGGGCCGA TGAAGAAATT GAGCTCGCCC GTCAAATCGC TGACTTGCTT
GCTCTAGAAC GCATTCGCGA TGAGTTGCTC GAACAGCTCG ATCGTTTGCC CAGCGACGCC
GAGTGGGCCG CTGCTGTTGA CTCGCCGCTG GATGAATTCC GCCGCCGCCT GTTCCGGGGT
CGCCGCGCCA AGGACAAGAT GGTGCAGTCG AACCTGCGGT TGGTGGTGTC GATCGCCAAG
AAATACATGA ACCGGGGTCT GTCCTTCCAA GACCTGATTC AGGAAGGTAG CTTGGGTCTG
ATTCGGGCTG CCGAAAAGTT TGACCACGAG AAGGGCTACA AGTTCTCGAC CTACGCGACT
TGGTGGATTC GCCAAGCCAT CACCCGCGCG ATCGCGGATC AAAGCCGCAC GATCCGCCTG
CCTGTTCACC TCTACGAAAC CATTTCTCGC ATTAAGAAAA CCACCAAGCT GCTTTCTCAG
GAAATGGGTC GTAAGCCCAC CGAGGAAGAG ATCGCCACTC GCATGGAGAT GACGATCGAG
AAGCTGCGGT TTATCGCTAA GTCAGCCCAG CTGCCAATTT CGCTGGAAAC CCCAATCGGT
AAAGAAGAAG ACTCGCGTCT GGGTGACTTC ATCGAAGCTG ATGGCGAAAC CCCCGAAGAT
GAAGTCGCAA AAAACCTGCT GCGCGAAGAC CTTGAAGGCG TCCTTAGCAC TCTCAGCCCC
CGCGAGCGCG ATGTGCTGCG CCTGCGCTAT GGCTTGGATG ACGGCCGCAT GAAAACGCTG
GAAGAAATCG GCCAGTTGTT TAATGTCACC CGCGAACGCA TCCGCCAGAT CGAGGCGAAA
GCACTGCGGA AACTGCGTCA TCCCAACCGC AACAGCATCC TGAAAGAGTA CATCCGCTAG
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| Protein sequence | MTQLISIDKE QEEAGMTQAT ELLDPALKPA ETKAKRSSRK KATTAVVEPA TTIAPTADVD
AIDDEDSVGE DEDAAAKAKA KVRKTYTEDS IRLYLQEIGR IRLLRADEEI ELARQIADLL
ALERIRDELL EQLDRLPSDA EWAAAVDSPL DEFRRRLFRG RRAKDKMVQS NLRLVVSIAK
KYMNRGLSFQ DLIQEGSLGL IRAAEKFDHE KGYKFSTYAT WWIRQAITRA IADQSRTIRL
PVHLYETISR IKKTTKLLSQ EMGRKPTEEE IATRMEMTIE KLRFIAKSAQ LPISLETPIG
KEEDSRLGDF IEADGETPED EVAKNLLRED LEGVLSTLSP RERDVLRLRY GLDDGRMKTL
EEIGQLFNVT RERIRQIEAK ALRKLRHPNR NSILKEYIR
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