Gene Synpcc7942_0604 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSynpcc7942_0604 
Symbol 
ID3775586 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSynechococcus elongatus PCC 7942 
KingdomBacteria 
Replicon accessionNC_007604 
Strand
Start bp592890 
End bp593633 
Gene Length744 bp 
Protein Length247 aa 
Translation table11 
GC content57% 
IMG OID637799015 
Productribulose-phosphate 3-epimerase 
Protein accessionYP_399623 
Protein GI81299415 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0036] Pentose-5-phosphate-3-epimerase 
TIGRFAM ID[TIGR01163] ribulose-phosphate 3-epimerase 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.000939667 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones29 
Fosmid unclonability p-value0.65152 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCGCGGG CACCAGCTGT TGGTAAACTG AGGAGCGATC GCCGCTTCAG TCCAAAGGCT 
ATGACGCAAA AATCCGTTGT TATTGCTCCG TCCATTCTGT CAGCGGATTT CAGCCGCTTG
GGCGACGATG TCCGCGCTGT TGACCAGGCT GGCGCTGACT GGATTCACGT CGATGTGATG
GATGGTCGCT TCGTCCCTAA CATCACCATT GGACCGCTGA TCGTTGAAGC GCTGCGCCCG
GTGACCCAAA AGCCGTTGGA CGTCCACTTG ATGATCGTCG AGCCGGAAAA ATATGTGCCG
GATTTCGCGA AAGCAGGGGC TGACATCATC TCGGTCCAAG CAGAAGCTTG CCCCCACCTG
CACCGCAACT TGGCTCAGAT CAAAGACCTC GGCAAGCAAG CAGGCGTCGT CCTCAACCCC
TCTACCCCAG TCGAAACCCT GGAATACGTG CTGGAGTTGT GCGACCTGAT TTTGATCATG
AGCGTCAACC CTGGCTTCGG TGGTCAGAGT TTCATCCCAG CTGTCCTGCC GAAAATCCGT
AAGCTGCGCG CCATGTGCGA TGAGCGTGGC CTTGATCCTT GGATTGAAGT CGATGGCGGC
TTGAAAGCCA ATAACACTTG GCAGGTGCTG GAAGCCGGTG CTAACGCAAT TGTGGCGGGC
TCGGCAGTCT TCAACGCGCC GGACTATGCT GAAGCGATCG CGGCGATTCG CAACAGCAAG
CGTCCTGAAC TTGTCACTGC TTAG
 
Protein sequence
MARAPAVGKL RSDRRFSPKA MTQKSVVIAP SILSADFSRL GDDVRAVDQA GADWIHVDVM 
DGRFVPNITI GPLIVEALRP VTQKPLDVHL MIVEPEKYVP DFAKAGADII SVQAEACPHL
HRNLAQIKDL GKQAGVVLNP STPVETLEYV LELCDLILIM SVNPGFGGQS FIPAVLPKIR
KLRAMCDERG LDPWIEVDGG LKANNTWQVL EAGANAIVAG SAVFNAPDYA EAIAAIRNSK
RPELVTA