| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Synpcc7942_0587 |
|---|
| Symbol | valS |
|---|
| ID | 3774828 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Synechococcus elongatus PCC 7942 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007604 |
|---|
| Strand | + |
|---|
| Start bp | 573854 |
|---|
| End bp | 576583 |
|---|
| Gene Length | 2730 bp |
|---|
| Protein Length | 909 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 637798998 |
|---|
| Product | valyl-tRNA synthetase |
|---|
| Protein accession | YP_399606 |
|---|
| Protein GI | 81299398 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0525] Valyl-tRNA synthetase |
|---|
| TIGRFAM ID | [TIGR00422] valyl-tRNA synthetase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.0235992 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 0.435222 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCACAA GTGCCTCGCA ATTGCAGACC CAATATAGCC CCGCTGCAAC TGAGGTCCGA
TGGCAGAAGT TATGGGAGGA AACATCAGCA TTCCAAGCCA ATAGCCAATC CTCTGCAGAG
CCCTATTGCA TTGTAATTCC GCCGCCCAAT GTGACAGGGA GCCTGCACAT GGGCCATGCT
TTTGAAGCCT CGCTGATTGA TGTTTTAATT CGTTTTCAGC GAATGCGCGG TAAGAATGCA
TTATGGCTAC CTGGAACTGA CCACGCCAGT ATTGCTGTTC AGACAATTCT CGATCGCCAG
CTCCGTGAAG AGGGACTGAG TCGTTATGAT CTCGGTCGCG AGAAATTTCT AGAAAGAGCT
TGGCAGTGGA AAGCTGAATC AGGTGGAACG ATTGTTGGTC AACTGCGGCG TTTAGGGGTT
TCAGTTGACT GGAGTCGTGA ACGCTTCACG ATGGATGAGG GCTTAAGTAA AGCTGTCCTT
GAGGCGTTTA TTCAGCTCTA TGAAGAGGGT CTTATTTATC GGGGCCAGTA CTTAGTGAAT
TGGTGCCCTG CTTCTCAGTC AGCAGTGTCT GATTTAGAAG TGGAAATGAA GGAAGTTGAT
GGATCTTTGT GGTACTTTCG CTATCCATTA ACGGATGGTA GCGGTCATCT GGAAGTCGCT
ACTACTCGTC CAGAAACGAT GTTGGGAGAT ACTGCTGTTG CAGTCAACCC GCAAGATAAA
CGCTATCAGC ATCTAATTGG CAAAACCATT ACCTTGCCTT TAGTCCAGCG AGAGATTCCG
ATTATTGCTG ATCCTTGGGT TGAGGCTGAA TTTGGAACGG GTTGCGTTAA AGTCACGCCC
GCGCATGACC CTAATGATTT TGCGATGGGT CAACGCCATC AATTACCACT GATTACAGTG
ATGAATAAAG ATGGCACGAT GAATGAAAAT GCGGGTCAAT TTGAGGGACT CGATCGCTTT
GAGGCTCGTA AAGCTGTCGT TGCTGCTTTG GAAGAGGCTG GTTTCCTCGT CAAGGTCGAG
GACTATCGCC ACAGCATCCC CATCAGCGAT CGCGGCAAGG TTCCTGTTGA ACCGCTGCTC
TCAACTCAGT GGTTCGTCAA GATTGAACCC TTGGCTCAAC GTGCACTAGA AGCCCTGAAT
GGCGAAGAAG GGCCTCGTTT TGTTCCTGAA CGTTGGACGA AGGTCTATCG GGATTGGCTG
GAAAATCTTC GAGATTGGTG TATCTCTCGG CAGTTATGGT GGGGGCATCA AATTCCAGCT
TGGTATGCCG TCAGTGAGAC GAATGGAGTT GTCACGGATT CAACACCGTT TGTAGTGGCG
AAGTCTGCAG AAGAGGCTCA GCAACAGGCG ATCGCTCAAT TTGGGCCTGA TGTTGTTCTG
CAGCAAGATG AAGATGTTCT GGATACCTGG TTCTCATCTG GTTTATGGCC ATTTTCAACC
TTAGGTTGGC CGAACCAGAC GGAAGATCTT GAGACGTTTT ATCCAACCAG TACCTTAGTC
ACGGGTTTCG ACATCATCTT TTTCTGGGTG GCTCGGATGA CGATGATGGC GGGTCACTTC
ACGGGCAAGA TGCCGTTTAA GGATGTCTAT ATCCACGGCC TTGTTCGAGA TGAAAATAAT
AAGAAGATGT CAAAATCAGC GGGAAATGGT ATTGACCCCC TGATTCTGAT CGATCGCTAT
GGTACAGATG CTCTTCGCTA TGCCCTGATT CGTGAGGTTG TGGGCGCCGG TCAGGATATT
CGCCTAGATT ACAACCGGAA GACAGATGAA TCGGCAACAG TTGAGACGAG CCGAAACTTT
GCCAATAAAG TTTGGAATGC AAGTCGTTTT GTCATGCTCA ACCTAGATGA CAAAACGCCT
GAGCAATTAG GAATGGCTGC AACCGCTGAT CTTGAACTGG CTGATCGCTG GATTCTCAGT
CGCTACCATG CCACTACTGA AGCACTGATC AATCAGATTG AAGCCTATGA TCTTGGAGCT
GCAGCGAAAC AACTCTACGA GTTTATCTGG GGCGATTTCT GTGATTGGTA TATTGAGCTG
GTTAAGCCTC GCCTTTATGG TGAAGACGCT CAGTCCCGCC TAGTTGCTCA GCAGACTTTA
GCTCAGATTC TGGAGGGCAT TCTTCGACTT TTGCATCCCT TCATGCCACA TGTGACTGAG
GAGATTTGGC ATACCTTAAA TCAAGTTGGC GAAGATCAGT TTTTAGCACT TCAGTCTTTC
CCTCAGCCGC AGTCTGAGTG GATTCAGCCT GAACTCGATC GCGAGTTTCA GCTCATGATT
GACGTGATTC GAACCCTGCG GAATCTGCGA GCAGAAGCAG GATTGAAGCC GGGGCAGAAA
ATTACTGCCA TTCTTCAAAG TGATAGTGAA TCAGAGCGCT GCAATTTAGA ACAGTCGCAA
GCCTACATTC GTGATCTCAC CAAGACAGAA ATGCTGACGA TCGTTGAGTC CCTGACCGAA
GAGCCTCAAG CTTTGGTTGG CGTCACTGCA ACGGTGCAGG TGCTGTTACC CTTGGCAGGT
CTGGTTGATT TGGCTGCCTT GCAGACAAAA CTGAGTCGCA ATCTGGAGAA GGTTGAGAAG
GAAATCAAAT CCCTTTCAGG ACGGCTGAAT AGTTCGAACT TTGTTGATAA AGCCCCTGCG
GAAGTGGTTG CTGAAACAAG AGAAAACCTG CTGGAAGCGG AGAAGCAAGC AGAGCTACTA
CGCGATCGCC TGACTCGCTT GCAGGCCTAA
|
|---|
| Protein sequence | MTTSASQLQT QYSPAATEVR WQKLWEETSA FQANSQSSAE PYCIVIPPPN VTGSLHMGHA
FEASLIDVLI RFQRMRGKNA LWLPGTDHAS IAVQTILDRQ LREEGLSRYD LGREKFLERA
WQWKAESGGT IVGQLRRLGV SVDWSRERFT MDEGLSKAVL EAFIQLYEEG LIYRGQYLVN
WCPASQSAVS DLEVEMKEVD GSLWYFRYPL TDGSGHLEVA TTRPETMLGD TAVAVNPQDK
RYQHLIGKTI TLPLVQREIP IIADPWVEAE FGTGCVKVTP AHDPNDFAMG QRHQLPLITV
MNKDGTMNEN AGQFEGLDRF EARKAVVAAL EEAGFLVKVE DYRHSIPISD RGKVPVEPLL
STQWFVKIEP LAQRALEALN GEEGPRFVPE RWTKVYRDWL ENLRDWCISR QLWWGHQIPA
WYAVSETNGV VTDSTPFVVA KSAEEAQQQA IAQFGPDVVL QQDEDVLDTW FSSGLWPFST
LGWPNQTEDL ETFYPTSTLV TGFDIIFFWV ARMTMMAGHF TGKMPFKDVY IHGLVRDENN
KKMSKSAGNG IDPLILIDRY GTDALRYALI REVVGAGQDI RLDYNRKTDE SATVETSRNF
ANKVWNASRF VMLNLDDKTP EQLGMAATAD LELADRWILS RYHATTEALI NQIEAYDLGA
AAKQLYEFIW GDFCDWYIEL VKPRLYGEDA QSRLVAQQTL AQILEGILRL LHPFMPHVTE
EIWHTLNQVG EDQFLALQSF PQPQSEWIQP ELDREFQLMI DVIRTLRNLR AEAGLKPGQK
ITAILQSDSE SERCNLEQSQ AYIRDLTKTE MLTIVESLTE EPQALVGVTA TVQVLLPLAG
LVDLAALQTK LSRNLEKVEK EIKSLSGRLN SSNFVDKAPA EVVAETRENL LEAEKQAELL
RDRLTRLQA
|
|---|
| |