Gene Synpcc7942_0585 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSynpcc7942_0585 
Symbol 
ID3774823 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSynechococcus elongatus PCC 7942 
KingdomBacteria 
Replicon accessionNC_007604 
Strand
Start bp566168 
End bp567388 
Gene Length1221 bp 
Protein Length406 aa 
Translation table11 
GC content56% 
IMG OID637798993 
ProductPDZ/DHR/GLGF 
Protein accessionYP_399604 
Protein GI81299396 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0000000357237 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value0.0103671 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGTCATC GTCGTTCTGG TCAGCGCCGG TTATCAGTCC GCGCAATCTT GAGTCACACC 
CTGGCAATTA GCTTGGGCGT CTTGGTGACA GTGGGCGGAT TACAAGCACG TCCCTCTTTG
GCCCAAGCAG CACCTGTAGA AATCGCACAA GCGACTCCTG CGAATACAGC AGCTCCCAAC
AGTAACCCAG ATAGTTTTGT TGCAGCAGCA GTCCGTCAGA TTGGCCCTGC AGTCGTTCGG
ATTGATACTG AGCGGACGGT GACACGGCGG GCAGCTCCCA TGTTTGATGA CCCGTTTTTC
CGTGAGTTTT TTGGGTCTGA CTTTTTTGGC AATGTCAATC CGCCAGCACG GCAAGAAGTA
CAGCGTGGTC AGGGTTCTGG TTTTGTCGTA GATGGTAACG GCTTGATCAT GACCAATGCC
CACGTGGTCG CCAATGCGGA TCAAGTGCGG GTCACGCTAC GGGATGGTCG AGAATTTACG
GGACGAGTGC GGGGTGCAGA CTCTGTCACT GATTTAGCGT TGGTAGAAGT TGATACCAAA
GGTGAACGGC TGCCCACTGC TCGCATCGGC AATTCCAGTA ATGTCGAGGT CGGAGACTGG
GCGATCGCGA TCGGGAACCC GCTCGGACTC GACAACACCG TCACTTTAGG GATTGTCAGC
AGCCTTGGCC GCCGGAGCAG CGCTGTCGGT ATTCCGGATA AGCGCCTCGA CTTTATCCAG
ACCGATGCAG CGATCAACCC CGGTAATTCG GGCGGCCCGC TGGTCAATAG TCGGGGCGAA
GTGATTGGCA TTAACACCGC CATTCGCCAA GCGCCGGGTG CAGGGATTGG CTTTGCGATT
CCAGTTAACA CGGCCAAGCA AATTGAAACG CAGCTGCTGA AAAACGGGAA AGTCTCACAC
TCCTACCTAG GGGTGCAGCT GCTCTCCCTG ACGCCACAAA TGGCTCGAGA TAACAACCGC
GATCCCAACT CCACCGTGCG CTTACCAGAA GTGCAAGGTG TCTTAATCAT GGGGGTTCAG
CGCAATGCAC CCGCTGCTAC TGCGGGACTG CGACGCGGAG ATGTGGTGAT AGCGATTGAT
GGTCAAGCGG TGACGACTGC GGATGAGTTC CAGCGCCGTG TCGAAGCGAG CCAAGTCGGC
CAGTCACTCA ACCTCAGCGT GATTCGCGAC GGTAACCGCC AGCAGATTGC TGTGCGCACT
GGCGAACTCC AAGCTGGTTA A
 
Protein sequence
MRHRRSGQRR LSVRAILSHT LAISLGVLVT VGGLQARPSL AQAAPVEIAQ ATPANTAAPN 
SNPDSFVAAA VRQIGPAVVR IDTERTVTRR AAPMFDDPFF REFFGSDFFG NVNPPARQEV
QRGQGSGFVV DGNGLIMTNA HVVANADQVR VTLRDGREFT GRVRGADSVT DLALVEVDTK
GERLPTARIG NSSNVEVGDW AIAIGNPLGL DNTVTLGIVS SLGRRSSAVG IPDKRLDFIQ
TDAAINPGNS GGPLVNSRGE VIGINTAIRQ APGAGIGFAI PVNTAKQIET QLLKNGKVSH
SYLGVQLLSL TPQMARDNNR DPNSTVRLPE VQGVLIMGVQ RNAPAATAGL RRGDVVIAID
GQAVTTADEF QRRVEASQVG QSLNLSVIRD GNRQQIAVRT GELQAG