Gene Synpcc7942_0539 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSynpcc7942_0539 
Symbol 
ID3774777 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSynechococcus elongatus PCC 7942 
KingdomBacteria 
Replicon accessionNC_007604 
Strand
Start bp523604 
End bp524353 
Gene Length750 bp 
Protein Length249 aa 
Translation table11 
GC content56% 
IMG OID637798947 
Producthypothetical protein 
Protein accessionYP_399558 
Protein GI81299350 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones38 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones35 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAATCAGC CTGTCAATTC AGCCATCACT TGGCGATCGC AACTCCTGCT TTGGCTGCTG 
GGGATGATGG GGGTTCTCTC GCTGTTATTA CTACCTCTGC CGCCACTAGG AGAGACTCCG
CTATCGCCAA TAGCTCTGCG AGTCTTGGTA CTGGCTCAGC CAACGATTTT GCTCACGATC
GCGGTTCTGA CTGGTAGTCG CCTTGCGCTA TCAGTCGGTT TGCAAGCGCC CGTAATTGTT
GCCTTGAGCA ATCGTCAGAA TGGCTGGCAA CTGCTTCAAC CTCAGCTTTG GCCTGCGCTC
TTGGGCGGAC TGCTGAGTAG TGTTTTGTTC TGGGCGATCG CGGGCGTTGG TCAATTCCTG
TTGCCACCTG CTTTTTCCAC TGCCAGTGCT CCGCCGCTCC TGCTGCGCTT CCTCTACGGC
GGGATTACCG AAGAAATTCT GCTGCGCTGG GGCTTAATGA CCTTTCTGCT CTGGCTGGGC
TGGCGCTGGG GACAACGTCG TCAGGGTTCA CCGCAAAAGT TTTGGGTAAC GATCGCAATT
CTCCTGTCTG CTCTCGTCTT TGCTGCGGCT CATCTGCCCT ATGCTGCTGC GATCGGGCTA
CCGCTGACGC CAGTTCTGAT CGGTTATTTA CTGCTGCAAA ACGGGCTGTT TGGGTTGGTG
GCAGGCTACC TCTATTGGCG CTACGGACTG GAAGGCGCGA TCGTTGCCCA CTGGGGAGTC
CACATCGTAC TAGCTATTCT TCAGGGTTGA
 
Protein sequence
MNQPVNSAIT WRSQLLLWLL GMMGVLSLLL LPLPPLGETP LSPIALRVLV LAQPTILLTI 
AVLTGSRLAL SVGLQAPVIV ALSNRQNGWQ LLQPQLWPAL LGGLLSSVLF WAIAGVGQFL
LPPAFSTASA PPLLLRFLYG GITEEILLRW GLMTFLLWLG WRWGQRRQGS PQKFWVTIAI
LLSALVFAAA HLPYAAAIGL PLTPVLIGYL LLQNGLFGLV AGYLYWRYGL EGAIVAHWGV
HIVLAILQG