| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Synpcc7942_0531 |
|---|
| Symbol | |
|---|
| ID | 3774769 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Synechococcus elongatus PCC 7942 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007604 |
|---|
| Strand | + |
|---|
| Start bp | 515313 |
|---|
| End bp | 516176 |
|---|
| Gene Length | 864 bp |
|---|
| Protein Length | 287 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 637798939 |
|---|
| Product | TPR repeat-containing protein |
|---|
| Protein accession | YP_399550 |
|---|
| Protein GI | 81299342 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG5010] Flp pilus assembly protein TadD, contains TPR repeats |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 0.259397 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 47 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAAGCGAA CTGCTCTCCT TGCCTTGCTT GCCGCTCTCA GTTGCAGTGG GACAGCGTTC
TCACCCGCCC AAGCCTTTAC GCCCTACGTA CCGGATCTCG ATTCGAAGTA TCTGGAGGAA
CAGGGGTTAG TGCTGGCACA GGAAGCGGCG CAGCTGCTGC AATTCCAGCA AATTGAATTT
GCTCAGCGGC AGGCAGCCTT GGCAACGCAG TTAGCCCCTA ATGATTTTCG AGTTTGGTTG
GTGCTGGCGG ATGCGAGTTT GCGGCTCAAT CAACTTGATC CGGCGATCGC TGCCCTAGAA
AAAGCGCAAA AACTGTCGCC CCGAGAGCCT GCAATTTTGT TTGCGTTGGG TTCAGCGCGG
TTCCGACAAG GCAATTACAG CGAGGCTGCG AGCTTTTTGC AGCGAGGTCT GGCGATTAAG
CCAGATTCGT CGGGTGCGCT GTTTGATTTA GGCAATGTGT ATCTCATTCA AAAGCAATAT
CCGCCTGCAA TCGCGGCTTT TCAAAAAGCG GTTCAGGTGA AGCCTGATTT CTGGGAAGCA
ATCAATAACC TCGGCTTAGT CAGTTATGAA CAGGGCGATC GCAATCAAGC GCTAAATTAT
TGGAATCGGG CGATCGAGTT GAGCAAAGAT GCAGCAGAGC CTGTGCTCGC TAAAGCCGTT
TTGGTCTATC AACAGGGCCA AACTGAAGAG GCCGTTCGAC TCGCTCAGCA AGCTCTCGGC
AAAGATAGCC AGTACGTCAG CCTCGATTTC CTCAAAGAAC AGCTCTGGGG CGATCGCCTT
TTGGCTGATA CTAATCGCCT CTTCCAAGCG CCTGGGCTCC AAGCAACTCT CCTTGAAGCT
CGTCAACGCG CCCAAACCCC ATAG
|
|---|
| Protein sequence | MKRTALLALL AALSCSGTAF SPAQAFTPYV PDLDSKYLEE QGLVLAQEAA QLLQFQQIEF
AQRQAALATQ LAPNDFRVWL VLADASLRLN QLDPAIAALE KAQKLSPREP AILFALGSAR
FRQGNYSEAA SFLQRGLAIK PDSSGALFDL GNVYLIQKQY PPAIAAFQKA VQVKPDFWEA
INNLGLVSYE QGDRNQALNY WNRAIELSKD AAEPVLAKAV LVYQQGQTEE AVRLAQQALG
KDSQYVSLDF LKEQLWGDRL LADTNRLFQA PGLQATLLEA RQRAQTP
|
|---|
| |