| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Synpcc7942_0277 |
|---|
| Symbol | ligA |
|---|
| ID | 3773839 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Synechococcus elongatus PCC 7942 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007604 |
|---|
| Strand | - |
|---|
| Start bp | 271493 |
|---|
| End bp | 273532 |
|---|
| Gene Length | 2040 bp |
|---|
| Protein Length | 679 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 637798683 |
|---|
| Product | NAD-dependent DNA ligase LigA |
|---|
| Protein accession | YP_399296 |
|---|
| Protein GI | 81299088 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
|---|
| TIGRFAM ID | [TIGR00575] DNA ligase, NAD-dependent |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 34 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 37 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGCTT CTCAGACGGG CCCGACCACC ACCGCGATCG CCCAGCGCGC CAGCGAATTG
CGACAGCTGT TGCAGCAGGC CAGCTATGCC TACTACGTCC TCGATCAGCC GGTGATGGAA
GATGCGGTCT ACGATCGCCT CTATCGGGAG TTGCAAGATC TAGAGCAGCA ACACCCCAGC
CTGATTACGC CCGACAGCCC CACGCAGCGC GTGGGTGAGC AACCGGCAAC TGGTTTCGAG
AGTGTCCAGC ATCGGATTCC GCTCTACAGT CTCGAAAATG CTTTTGATGC TGAAGAGTTA
CGGTCTTGGG ATCAGCGCTG GCGTAAACTC GCGCCCGATG TTCCGGCTGA TGCAGGCTAC
GTCTGTGAAC TGAAAATTGA TGGAGCCGCG ATCGCTCTCA GCTACGAAAA CGGTCTGCTG
GTGCGGGGTG CAACTCGGGG CGACGGCACC CGTGGCGAAG AAATCACAGC GAATCTACGC
ACGATTAAAA GCATTCCACT GCGGCTCCAA ACCGACCAAC CGCCCGAGTG GTTAGAAGTG
CGGGGCGAAG CTTTTCTGTC TCTGACTCGC TTTAAGCAAC TCAACACCGA ACGGGAGAAG
CATGGTGAGG CTCTTTTTGC CAACCCGCGT AACGCCGCCG CCGGAACCTT ACGCCAACTG
GATCCTCGCA TTGTCGCCGA ACGTCAGCTC GACTTTTTTG CCTACTCGAT TCAAGGGCCT
AATGACTGGG CAAACCTTGA CCAAGCCGCC AGCCTCGATT GTCTTCAGAG TCTGGGCTTT
CGAGTCGAAC CGCACCGCCA AACCTGCCCA ACGCTAGCAG AAGTGGAGCA GTACTTCAGC
GATTGGGATG CCCGCCGCCG CGACCTGCCC TATCTCACCG ATGGCGTGGT TGTGAAACTG
CAATCACGCC GCCTGCAAGA CGAGCTGGGC TTCACCCAGA AATTTCCACG CTGGGCGATC
GCCCTCAAAT ATCCAGCCGA CGAAGCGCCG ACCCAACTGC AGCACGTCAC TGTCCAAGTT
GGGCGAACGG GAGCACTGAC GCCTGTGGCT GAATTTTCTC CCGTTGCATT GGCGGGAACC
ACCGTCAGCC GCGCCACCCT CCACAACGCC GATCGCTTGC GGGAACTCGA CTTACACATT
GGCGACACGA TCGTGGTGCG CAAGGCGGGC GAAATCATTC CCGAAGTCGT GCGCGTCCTC
ACTGACCTGC GGCCGGCCGA TGCTAAACCT GTCGTGCTGC CGGAGAAGTG TCCTGAATGT
GGCCAGCCGG TGCAACGGCC TGAAGAAGAA GCCGTCACCC GCTGCGTTAA CTCAACCTGT
CCTGCGATCG TGCGGGGGGC ACTGACCCAT TGGGCCAGCC GGGATGCCCT CGACATCGAA
GGTCTAGGCG AAAAGCTCGT CGATCAACTG GTCAGCAAAG GACTCGTCAA CGCGATCGCC
GACCTCTATC GACTGGATGC TCCGCTCCTC GCCAGTCTGG AGCGCTTTGG TGAAAAGTCG
GCACAGAATT TGGTTCAGGC GATCGCAAAG TCACGCCAGC AACCTTGGTC GCGAGTGCTC
TACGGTCTCG GGATTCGTCA TGTGGGATCC GTCAACGCCA AAAATCTGGC AGCCACTTTC
ACCTCAGCTG AGGCTCTCGC GCAAGCAACA CCGGACGAAC TGGCCGCTGT CTATGGCATT
GGCAGCGAAA TCGCCGACGC GGTTCACCAG TGGTTCACCG TTGCCACGAA TCAAAATCTG
ATTGCAGCGC TAGAGCAAGC TGGGCTGCAA CTACATGGGG AAGCAGCGAG CCCGCGATCG
CAAGCTTTGG CCGGTCAAAC CTTTGTCCTG ACTGGCACGC TGCCGACCCT GAGCCGAAAC
GAAGCCAAAG CCTTGATTGA AGCGGCGGGC GGCAAAGTCT CGGGCTCCGT CAGCAAGAAA
ACCAGCTATG TTGTCGCCGG CGAAGAAGCG GGAAGCAAGC TGGAAAAAGC GATCGCCCTC
AACATTCCCC AACTCAACGA AACACAACTG CTGGACTTGC TTGCCCAAGC AGAGGGGTAG
|
|---|
| Protein sequence | MTASQTGPTT TAIAQRASEL RQLLQQASYA YYVLDQPVME DAVYDRLYRE LQDLEQQHPS
LITPDSPTQR VGEQPATGFE SVQHRIPLYS LENAFDAEEL RSWDQRWRKL APDVPADAGY
VCELKIDGAA IALSYENGLL VRGATRGDGT RGEEITANLR TIKSIPLRLQ TDQPPEWLEV
RGEAFLSLTR FKQLNTEREK HGEALFANPR NAAAGTLRQL DPRIVAERQL DFFAYSIQGP
NDWANLDQAA SLDCLQSLGF RVEPHRQTCP TLAEVEQYFS DWDARRRDLP YLTDGVVVKL
QSRRLQDELG FTQKFPRWAI ALKYPADEAP TQLQHVTVQV GRTGALTPVA EFSPVALAGT
TVSRATLHNA DRLRELDLHI GDTIVVRKAG EIIPEVVRVL TDLRPADAKP VVLPEKCPEC
GQPVQRPEEE AVTRCVNSTC PAIVRGALTH WASRDALDIE GLGEKLVDQL VSKGLVNAIA
DLYRLDAPLL ASLERFGEKS AQNLVQAIAK SRQQPWSRVL YGLGIRHVGS VNAKNLAATF
TSAEALAQAT PDELAAVYGI GSEIADAVHQ WFTVATNQNL IAALEQAGLQ LHGEAASPRS
QALAGQTFVL TGTLPTLSRN EAKALIEAAG GKVSGSVSKK TSYVVAGEEA GSKLEKAIAL
NIPQLNETQL LDLLAQAEG
|
|---|
| |