| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Synpcc7942_0270 |
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| Symbol | |
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| ID | 3773832 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Synechococcus elongatus PCC 7942 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007604 |
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| Strand | + |
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| Start bp | 265975 |
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| End bp | 267168 |
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| Gene Length | 1194 bp |
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| Protein Length | 397 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 637798676 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_399289 |
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| Protein GI | 81299081 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0463] Glycosyltransferases involved in cell wall biogenesis
[COG3063] Tfp pilus assembly protein PilF |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 41 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCCAAG TCAGCCTTTG CATGATCGTT CGCGATGAGG CGGAATTGCT GCCCCGCTGT
CTGGCTTCGG TGAAAGACCA GGTCGATGAG CTGATTGTGC TGGATACGGG TTCCCGCGAT
CGCACGCCAG CAATTGCCAC GGAAGCCGGT GCCAAGTTGC TCCACACCGA TTGGGCTGAC
GACTTCTCCG CAGCGCGGAA TCAGGCGATT GCTGCAGCAA CGGGCGACTG GATTTTAGTG
CTGGATGCTG ATGAGGAACT GATCCTAGAA GCTTGGACAG AATTGCGATC GCAACTGGAT
CAACCCGAAG CCCTCGCCTT TACGGTTCTG CGCGAAGAAA CCCAAGCAGG ACAAGTGCCC
TACTCGCGGC TGTCGCGATT GTTTCGCAAT CGACCCGACA TTCGTTTCCA GCGGCCTTAT
CACGAGTTGG TCGATGACAG CCTCCTTGCC CTGCAACAAC AGGAACCCAA CTGGCGGATT
ACGGCTTGGC CGACACCGGT GATTCGGCAC TACGGCTATG GCCGCGATCG CCTGCAACAG
CGGGGTACGG CAGAACGGAT GCGGCAAAGT CTCGAAACAT GGCTGGCCGA TCATCCCGAA
GATGCCTACC TCTGCAGCAA GCTGGGCGGG TTGCTTGTTC AAGAAGGAGA TTTGAAAGCA
GCACAACGCT GGCTTAAACA AGGACTGAAG CAGGGGCGTC CAGAACCGGC CGTTCGCTAT
GAGTTGCTCT ATCACTTGGC GCTGTTGGAA CGGCGGCAGG GTGATTTGGA TGCGGCGATC
GATCGCTATC AAGCGGCTCT GCAAGAGCCA GTGGACGCAA TTCACAAGCT TGGCGCTTGG
GTTAACCTTT CGCATCTCTA CCGCGATCGT GGGCAGCTGG GGCTGGCCTA TGATGCAGCA
CGTCAGGCTG TGGCCGCTGC TCCGCAAGCC ACGGTTGCCT TAACCGCTTT GGGACTCGCA
GCTCGCGCAA TCGGTAACTA TCCGGAGGCG ATCGCTGCCT ATCAGCAGGC ACTCCAGCTC
GATCCCAACG ATCCCAGCCT CTACCAAAAT TTGGGTGCTG TCCTCTTCCA GGTCGGACAA
CTGGAAGCCA GTTACGCAGC CTTTCGACAG GCGATCGCGG GCTATGAGCA GCAGGGCTCA
CCAGAGGCGC AACGGCTAGA ACTGCGGCTG CAAGCCATGG GAATTCGGCT ATGA
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| Protein sequence | MAQVSLCMIV RDEAELLPRC LASVKDQVDE LIVLDTGSRD RTPAIATEAG AKLLHTDWAD
DFSAARNQAI AAATGDWILV LDADEELILE AWTELRSQLD QPEALAFTVL REETQAGQVP
YSRLSRLFRN RPDIRFQRPY HELVDDSLLA LQQQEPNWRI TAWPTPVIRH YGYGRDRLQQ
RGTAERMRQS LETWLADHPE DAYLCSKLGG LLVQEGDLKA AQRWLKQGLK QGRPEPAVRY
ELLYHLALLE RRQGDLDAAI DRYQAALQEP VDAIHKLGAW VNLSHLYRDR GQLGLAYDAA
RQAVAAAPQA TVALTALGLA ARAIGNYPEA IAAYQQALQL DPNDPSLYQN LGAVLFQVGQ
LEASYAAFRQ AIAGYEQQGS PEAQRLELRL QAMGIRL
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