| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Synpcc7942_0241 |
|---|
| Symbol | |
|---|
| ID | 3773804 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Synechococcus elongatus PCC 7942 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007604 |
|---|
| Strand | + |
|---|
| Start bp | 235487 |
|---|
| End bp | 236854 |
|---|
| Gene Length | 1368 bp |
|---|
| Protein Length | 455 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 637798647 |
|---|
| Product | 23S rRNA (uracil-5-)-methyltransferase RumA |
|---|
| Protein accession | YP_399260 |
|---|
| Protein GI | 81299052 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase |
|---|
| TIGRFAM ID | [TIGR00479] 23S rRNA (uracil-5-)-methyltransferase RumA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 0.468571 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 0.547918 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCTTCTT CTGCCGTGCT TACTTGGCGT CAGGGCGATC GCCTCAGCCT GACGATCGAG
TCGCTCTGTG ACAGCGGCGA CGGCCTCGGG CGCGTAGAGG GACGCGTGGT TTTTGTGCCC
GATACGGTGC CGGGCGATCG CATTCAAGCC AAGCTGCTGC AGGTGCGATC GCGTTATGCC
CGTGCCGAGC TAGAAGAAGT GCTGGAGGCA TCACCGGATC GGATTCGACC GGCCTGCATC
GTTGCGGATA AGTGCGGTGG CTGTCAGTGG CAAACCGTGG ACTACCCTGC CCAAGTCGAG
GCAAAAACGG TGATTGTCCA AGACGCCATG CAACGGTTGG GGCAACTCGA GACGGAAGTT
CAACCGACGA TTGCAGCTCC CTATCCGCTG GGCTATCGCA ACAAGGTCAG CTATCCGCTC
CGGCGCAGCG ATCGCGGGGA GGTGCAAGCG GGCTACTTCC GTAAAGGCAG CCACCGCCTG
ATCAACCTCA ATCAGTGTCC GGTACAAGAT GACCGCTTGA ATCCGCTGCT CGCAGGCATC
AAGGCTGATA TTGCAGCTCG GGATTGGCCG ATCTATGACG AGCAGACCCG ATCGCGTGGC
CTCCGGCATT TGGGACTGCG CATCGGTCAG CGTACCGGTG AGATCCTGAT CACTTTGATT
GCTACCGACG ATCAGTTGCC AGAGGTGGAA GCTCAAGCAG AACAGTGGCT GACCGACTAT
CCCAATGTGG TCGGGGTTTG CCTCAACCTC AATCCCAGCC ACGGCAATCG CATTCTGGGT
GACGAGACCC ATTGTTTAGC GGGTCGTCCT TATCTGATTG AGTGTTTGGA CGATTTGGAA
TTTGCAATCG GACCGGAGAC CTTTTTCCAA GTCAATACAG AGCAAGCAGA GCGCCTGCTG
CCAATCCTCA AAGACTTTTT GCGGGGCAGC GATCGCCTCT TCGATCTCTA CTGCGGCGTC
GGGACATTAA CCCTGCCTTT GGCCAGTGAG GTAGGGTCAG TGCTGGGGCT AGAAATCCTG
CCGGAATCGG TGGTGCAAGC GCAACAAAAT GCTGATCGCA ATGGCATCAG CAATGTTGAA
TTTCGGGCGG GTGCGGTCGA GATCTTACTC GCGCAAATTC CCGAGTCTCC CGATGCTGTT
CTTCTAGATC CGCCGCGCAA AGGCTGCGAA CCAGCGGTGA TTGAAGTGCT GCGCGATCGC
CAACCGCAAC GCATTGCCTA CGTGAGCTGC AACCCTGCAA CCCTGGCCCG CGATCTCCAA
GCCCTCTGTG CGGGCGATCG CTATCGTCTA TTGCTCGTGC AACCCCTAGA TTTCTTCCCG
CAGACCGCCC ATGTTGAGAC AGTCGCACTC CTCGAATTGC AAGATTAG
|
|---|
| Protein sequence | MSSSAVLTWR QGDRLSLTIE SLCDSGDGLG RVEGRVVFVP DTVPGDRIQA KLLQVRSRYA
RAELEEVLEA SPDRIRPACI VADKCGGCQW QTVDYPAQVE AKTVIVQDAM QRLGQLETEV
QPTIAAPYPL GYRNKVSYPL RRSDRGEVQA GYFRKGSHRL INLNQCPVQD DRLNPLLAGI
KADIAARDWP IYDEQTRSRG LRHLGLRIGQ RTGEILITLI ATDDQLPEVE AQAEQWLTDY
PNVVGVCLNL NPSHGNRILG DETHCLAGRP YLIECLDDLE FAIGPETFFQ VNTEQAERLL
PILKDFLRGS DRLFDLYCGV GTLTLPLASE VGSVLGLEIL PESVVQAQQN ADRNGISNVE
FRAGAVEILL AQIPESPDAV LLDPPRKGCE PAVIEVLRDR QPQRIAYVSC NPATLARDLQ
ALCAGDRYRL LLVQPLDFFP QTAHVETVAL LELQD
|
|---|
| |