Gene Synpcc7942_0112 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSynpcc7942_0112 
Symbol 
ID3773452 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSynechococcus elongatus PCC 7942 
KingdomBacteria 
Replicon accessionNC_007604 
Strand
Start bp111686 
End bp113140 
Gene Length1455 bp 
Protein Length484 aa 
Translation table11 
GC content59% 
IMG OID637798518 
Productdeoxyribodipyrimidine photo-lyase type I 
Protein accessionYP_399131 
Protein GI81298923 
COG category[L] Replication, recombination and repair 
COG ID[COG0415] Deoxyribodipyrimidine photolyase 
TIGRFAM ID[TIGR03556] deoxyribodipyrimidine photo-lyase, 8-HDF type 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.00531501 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones32 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGGCGGCTC CGATTCTGTT TTGGCACCGG CGTGACCTGC GCCTCAGCGA CAACATTGGT 
CTGGCGGCGG CGCGGGCACA ATCAGCGCAG CTGATCGGTC TGTTTTGCCT CGACCCTCAG
ATTCTCCAGA GTGCTGACAT GGCGCCAGCA CGGGTTGCCT ACCTGCAGGG CTGCCTACAG
GAACTCCAGC AGCGTTATCA ACAGGCGGGC AGTCGGCTGC TATTGCTCCA AGGGGATCCA
CAACACCTGA TCCCGCAACT GGCGCAGCAG CTTCAGGCGG AAGCAGTTTA TTGGAACCAA
GACATTGAAC CCTACGGCCG CGATCGCGAT GGGCAGGTCG CAGCCGCTCT GAAAACGGCA
GGCATTCGGG CTGTTCAACT CTGGGATCAA CTGCTCCATA GCCCCGATCA AATCCTCAGC
GGCAGCGGTA ATCCCTACAG CGTCTACGGG CCGTTTTGGA AAAATTGGCA GGCTCAGCCC
AAGCCCACGC CGGTTGCCAC ACCGACAGAA CTGGTCGATC TCTCACCAGA GCAACTAACT
GCGATCGCAC CTCTGCTGTT GTCGGAACTA CCGACCCTGA AGCAGCTTGG CTTTGACTGG
GACGGGGGTT TTCCAGTGGA GCCGGGGGAA ACAGCGGCGA TCGCCCGTCT TCAAGAATTT
TGCGATCGCG CGATCGCCGA CTACGATCCC CAGCGCAATT TTCCGGCGGA AGCAGGAACC
TCGGGCTTGA GTCCCGCTTT GAAATTCGGG GCGATCGGTA TTCGTCAGGC TTGGCAGGCT
GCCAGTGCAG CCCATGCCCT CAGCCGCAGC GACGAAGCCC GCAACAGCAT TCGCGTTTGG
CAGCAGGAAC TCGCTTGGCG GGAGTTCTAT CAGCATGCGC TCTACCATTT CCCGAGCCTG
GCCGATGGTC CCTATCGCTC GCTCTGGCAG CAATTCCCTT GGGAAAATCG CGAGGCTCTG
TTCACGGCTT GGACCCAGGC GCAAACGGGC TATCCGATTG TTGATGCAGC GATGCGCCAA
CTGACTGAAA CCGGCTGGAT GCACAACCGT TGCCGGATGA TTGTTGCCAG CTTTTTGACC
AAGGATTTGA TCATCGACTG GCGGCGTGGG GAGCAGTTCT TTATGCAGCA CTTGGTCGAT
GGCGATCTGG CTGCAAATAA CGGCGGTTGG CAGTGGAGCG CTTCCAGTGG CATGGATCCC
AAACCGCTGC GGATTTTCAA TCCTGCTAGT CAGGCCAAGA AGTTTGATGC CACGGCGACC
TACATCAAAC GTTGGCTGCC AGAACTGCGC CATGTCCATC CCAAGGACTT GATCAGTGGG
GAGATCACGC CGATTGAACG CCGAGGCTAT CCTGCCCCGA TCGTGAATCA CAACCTGCGC
CAGAAACAGT TCAAGGCGCT CTACAACCAG CTCAAAGCGG CTATCGCTGA ACCTGAGGCT
GAGCCCGATT CATAG
 
Protein sequence
MAAPILFWHR RDLRLSDNIG LAAARAQSAQ LIGLFCLDPQ ILQSADMAPA RVAYLQGCLQ 
ELQQRYQQAG SRLLLLQGDP QHLIPQLAQQ LQAEAVYWNQ DIEPYGRDRD GQVAAALKTA
GIRAVQLWDQ LLHSPDQILS GSGNPYSVYG PFWKNWQAQP KPTPVATPTE LVDLSPEQLT
AIAPLLLSEL PTLKQLGFDW DGGFPVEPGE TAAIARLQEF CDRAIADYDP QRNFPAEAGT
SGLSPALKFG AIGIRQAWQA ASAAHALSRS DEARNSIRVW QQELAWREFY QHALYHFPSL
ADGPYRSLWQ QFPWENREAL FTAWTQAQTG YPIVDAAMRQ LTETGWMHNR CRMIVASFLT
KDLIIDWRRG EQFFMQHLVD GDLAANNGGW QWSASSGMDP KPLRIFNPAS QAKKFDATAT
YIKRWLPELR HVHPKDLISG EITPIERRGY PAPIVNHNLR QKQFKALYNQ LKAAIAEPEA
EPDS