Gene Synpcc7942_0090 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSynpcc7942_0090 
Symbol 
ID3773430 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSynechococcus elongatus PCC 7942 
KingdomBacteria 
Replicon accessionNC_007604 
Strand
Start bp88735 
End bp89718 
Gene Length984 bp 
Protein Length327 aa 
Translation table11 
GC content56% 
IMG OID637798496 
ProductGntR family transcriptional regulator 
Protein accessionYP_399109 
Protein GI81298901 
COG category[K] Transcription 
COG ID[COG1725] Predicted transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones34 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones34 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATTCGTT TTCACATCCA AGCCGACAGC GACATCCCTG CGTCGACACA GCTATACAAC 
CAGATTCACT TCGCGATCGC GTCTCGCCAG TATCCGCCGG GGCACAAGCT GCCCAGCACC
CGCCAGCTAG CCATGCAGAC GGGATTGCAT CGCAACACGA TCAGCAAGGT CTATCGCCTG
CTCGAAGAAG ACGGCGTTGT CGAAGCCCAG GCCGGTTCCG GCATCTATGT GCGGGGGGGC
AATGACCCTC GTGAGACGGC GAAGAGTCAG CGCTTGCGCA AGCAGTATCC CGATATCGAT
CAACAGATTC GTGATCACAT TGACACGTTG TTGCAGCAGG GTTGCTCCCT AGCTGAGATC
CGTGAACTGT TCTTAGCAGA GGTGGATTGG CGGTTGCGCT GTAGCGCCAG CGTCCTAGTC
ACAGCGCCTT TGCAAGACCT AGGAGCGGCG GAGTTGATGT ATCGGGAGCT GTCCCAAGCC
TTGGGTGTGC CCGTTGAAGT GGTTCCCTTG GAAGAGTTGG GCGCCATCCT CAAACAAAAA
GACAGCGGCA CTGTGGTCAC AAGCCACTAC TTCTTCCAAG ATGCCGAGGC GATTACTGCT
AGCCTTGGGG CTCGCACGAT CGCGCTGGAT CTCTACGACT ATCGCGAAGA ACTCTCATTC
TTGAGTCAGC AAAAGGAAGG TAGCTGCATC GGCATTGTCA GTATTAGCCC GGGCATCCTG
CGGGCGGCGG AAATTATCAT CCACAGCTTG CGCGGCGAAG CACTGCTGAT CATGTCCTGT
CAGCCCAATG ACCAAACCAA GTTGGAAGCG ATGCTGCGCA GTGCGTCGGT GATCATCTGC
GATCAATCCA GCATTGACAA CGTCAAGCAG CGCGTCAGTG CGATTCGGGA CGACTTGATC
CGCTTACCCC GTTTGCTCTG CAGCAAAAGC TACATCAGCG AGGCCTCGAT CGCTCTGCTG
AAGCGGGAAC TGGGTTTGAA CTAA
 
Protein sequence
MIRFHIQADS DIPASTQLYN QIHFAIASRQ YPPGHKLPST RQLAMQTGLH RNTISKVYRL 
LEEDGVVEAQ AGSGIYVRGG NDPRETAKSQ RLRKQYPDID QQIRDHIDTL LQQGCSLAEI
RELFLAEVDW RLRCSASVLV TAPLQDLGAA ELMYRELSQA LGVPVEVVPL EELGAILKQK
DSGTVVTSHY FFQDAEAITA SLGARTIALD LYDYREELSF LSQQKEGSCI GIVSISPGIL
RAAEIIIHSL RGEALLIMSC QPNDQTKLEA MLRSASVIIC DQSSIDNVKQ RVSAIRDDLI
RLPRLLCSKS YISEASIALL KRELGLN