| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Synpcc7942_0047 |
|---|
| Symbol | |
|---|
| ID | 3775760 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Synechococcus elongatus PCC 7942 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007604 |
|---|
| Strand | + |
|---|
| Start bp | 46515 |
|---|
| End bp | 48881 |
|---|
| Gene Length | 2367 bp |
|---|
| Protein Length | 788 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 637798453 |
|---|
| Product | TPR repeat-containing protein |
|---|
| Protein accession | YP_399066 |
|---|
| Protein GI | 81298858 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG5010] Flp pilus assembly protein TadD, contains TPR repeats |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.210348 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTTATT TTTATCTAGC TGAAGCTGGG GATTGGTCAT TTCGAACGGT TTGGCACGAT
CGCTTCTTTA CTGTTCTCAA ACATCATCCG GCACGGACTG AAAAGGTTGA GCAGGCAGAC
TATATTTTTC TGGATGCAGA TTTTGCCCTA GAGACCAACT GGCCGTATTA CGGATCGCAA
CGTAAGGCGA TTTTAAAGGG CGATCGCTTT CCAACAGATG AAGAAATTTT AGCGTTTCTG
TTTGATCATC CGGTCAGTGG CTATGGCAAG CCCTTGGTGC TAATCAATAT GAATCCATTG
GCACAGTGGC CAGCGATCGC ACAGGTATTG CCGGATGTGG TGGTGGTGAG TCATTGCCAT
ACACTGGGAA ACTATCGCGT TGGCATTGAT GTGAGTTTTC CTCCGATGCC ACTCTTAGAT
CAGCATTGCT ATCCAAGCCG AGATCGCTCA ACTTTACTCA GTTTTCGGGG AGCTAATAGT
CATCCGGTGC GGGAGCAATT ACAACGGCTT CATCAGCCAC CCGAGATTGC AGCTGAGCTG
ATCCAGCAAA GCTATTGGGG GACGTTGAAT TATGTGGATG AGGCTGAGGG ACTAAGCGCT
GAGCAACAAG TCTATACAGA TTTAATTGCC CGATCGCGCT TTTCTGTAGC TCCACGTGGC
CATGATATTT TTTCCTATCG CTTGCTAGAG GTGATGGCAG GCGGGGCGAT TCCGGTCATT
TTGGCTGATG ATTGGGTGCT ACCGTTTTCG GAGTTGCTGG ATTGGTCAGA GTTTTCGCTA
TCTGTTGCTG AAGATCGCTG TTGGGAATTA CCGCAGCTCC TTCAAGCGAT TTCAACGGAT
CAATGGCAGG TGATGCAGCA GCATTTGCAA CAGGTTTATC AGCACTATTT CTATTCTTTG
GCACGACAGG TGCAGACGCT GTGGCAAATC TTGGATCAGC GATCGCTTCA TCCTTCTGCG
TCAGAGGTAG AGATTGAGGC GGTGTTGTTG TCTCAGGCGG AACGGTATCG ACTTAAGGGA
GATCTGGAAG CAGCCGCAAC TTATTTGGCA ACACTGCCCC GGTCGCCAGC TCGGATTTTA
GAGCAAGCAC GCTTAGCGTT GACGCAACAG CAACCCAAAG CAGCATTGGC CTTACTGGAT
TCCATGGTGA TGCCGGAGGC AGAGCAGGGA GAGCATTACA ACTTGCTGGG GGTGGCGCAA
ACGCAACTCG GGGAATGGGA TACGGCGATC GCAATCTATC GACAGGGATT GCAGGCACAG
CCCCACCATC CAAAATTGCG CACCAATCTT TGTGTGGCGT TGCGGCAGCA GGAACAGTGG
GAAGAGGCAT TAGCTCTTAG TCAAGCACTA CTAGAAGAGG TACCGGCAGC GATCGATCGC
CTACTGCTAC AAGCTGATAC GCTCAATTTG GCAGGTCGGT ATGATCAGGC GCTATCGCTA
TATCAGCAGG TGGTGGCGCG AGAACCAGAA CGAGCAAATG CTCAGCTGGC GATCGCAGAA
ATTTTGTTGC GGCAGGGCAA GGCAGAAGGT TGGGATATCT ATGAAGCTCG CTTTGCTGCG
GAGCCGAGTT TGGCAGCGTT GGCGGCGCAT TATCCGCAAC CACGATGGCA GGGGGTAGAG
CTGGGTCAGC GATCGCTATT GGTGTGGGGA GAGCAGGGCT ATGGCGATCA AATTCAGTTC
AGTCGCTACT TGTGGGTGCT GCGCGATCGC TATCCGCAGG CTCGTATTCA GTTCCAGACG
GATGCGGTAC TAGTGCCGTT GTTTGCGGAG CCGCTGGCAA GTTTGGGCAT TAAGGTGATT
CCGGCACAGA TAACGGAAGA ATTATTTGAT TTTCAGGTGC CGTTGCTGTC GTTGCCTCGG
TTGGTGTGGC CGAGCTTAAA AGATATTCCC TATCGCGAGG GTTGGTTGCC TTGTCCGTTG
CCACCGCCTC GTGAGGATCA AAACCACAAG TTTCGGGTTG GAATTGTTTG GCTGGCGGGT
CAGCGGGCAG GAATACAAAA GAGTGCGACA GCGGATCGGC GCAGCTGTTC GCTAGAAGCA
ATGTTGGAGC TGGTGCGAGA AAGTATGCAG AGGTCAGATC TGGAAGTGGT GAGTCTGCAG
TTGGGGTATG AGGGTAGGTT ACCGGAAGGG ATTCAGGATT GGAGCAATCG CTTGGTGGAT
TTTTCAGCAA CGGCTCGGGT GTTGATGGAA TTGGATCTAC TGGTGACGGT GGATACTGCG
ATCGTGCATT TGGCAGGGGC AATGAGAACA CCAGCAAAAG TTCTTCTTGC TTACCCAGCA
GATTGGAGAT GGCAGCAAAA CTTGGAATTA ACTTGGTACT CTTCTATAGA GCTTTGTTAC
TTTGCCCATC TGCTTTCAAG TTTTTAG
|
|---|
| Protein sequence | MAYFYLAEAG DWSFRTVWHD RFFTVLKHHP ARTEKVEQAD YIFLDADFAL ETNWPYYGSQ
RKAILKGDRF PTDEEILAFL FDHPVSGYGK PLVLINMNPL AQWPAIAQVL PDVVVVSHCH
TLGNYRVGID VSFPPMPLLD QHCYPSRDRS TLLSFRGANS HPVREQLQRL HQPPEIAAEL
IQQSYWGTLN YVDEAEGLSA EQQVYTDLIA RSRFSVAPRG HDIFSYRLLE VMAGGAIPVI
LADDWVLPFS ELLDWSEFSL SVAEDRCWEL PQLLQAISTD QWQVMQQHLQ QVYQHYFYSL
ARQVQTLWQI LDQRSLHPSA SEVEIEAVLL SQAERYRLKG DLEAAATYLA TLPRSPARIL
EQARLALTQQ QPKAALALLD SMVMPEAEQG EHYNLLGVAQ TQLGEWDTAI AIYRQGLQAQ
PHHPKLRTNL CVALRQQEQW EEALALSQAL LEEVPAAIDR LLLQADTLNL AGRYDQALSL
YQQVVAREPE RANAQLAIAE ILLRQGKAEG WDIYEARFAA EPSLAALAAH YPQPRWQGVE
LGQRSLLVWG EQGYGDQIQF SRYLWVLRDR YPQARIQFQT DAVLVPLFAE PLASLGIKVI
PAQITEELFD FQVPLLSLPR LVWPSLKDIP YREGWLPCPL PPPREDQNHK FRVGIVWLAG
QRAGIQKSAT ADRRSCSLEA MLELVRESMQ RSDLEVVSLQ LGYEGRLPEG IQDWSNRLVD
FSATARVLME LDLLVTVDTA IVHLAGAMRT PAKVLLAYPA DWRWQQNLEL TWYSSIELCY
FAHLLSSF
|
|---|
| |