| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PMT9312_1790 |
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| Symbol | |
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| ID | 3766617 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Prochlorococcus marinus str. MIT 9312 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007577 |
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| Strand | + |
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| Start bp | 1683968 |
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| End bp | 1684987 |
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| Gene Length | 1020 bp |
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| Protein Length | 339 aa |
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| Translation table | 11 |
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| GC content | 38% |
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| IMG OID | 637798336 |
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| Product | type II alternative sigma-70 family RNA polymerase sigma factor |
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| Protein accession | YP_398287 |
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| Protein GI | 78780175 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02997] RNA polymerase sigma factor, cyanobacterial RpoD-like family |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.0397126 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGGGATCC CTCTGGAATC TGCGAAAAGC TCTTCAGATA ATAATTTTGA TGAGCCAAGA
TTACCAAACA CTGCGGGCAA GTCTCGCAAA TCGAAATCCA GTCTTACGGC AAAACAAAGC
CAAAAAAAAT CTGGCAGACT CGCTTCAGAT TCTATTGGCT ATTACTTAAG TAGCATTGGT
AGAGTACCTC TTTTGACTCC AGCAGAGGAA ATAGAGTTAG CTCATCATGT TCAGAACATG
AAAAAGTTGC TACAAATTCC TGAAACTGAT AGAACGCAAC GAAATCTTTA TCAAATTAAG
ATTGGAAAAA GAGCCAGAGA TAGAATGATG GCAGCTAATC TAAGACTTGT TGTCTCCGTT
GCAAAAAAAT ACCAAAACCA AGGCCTTGAA TTATTAGACC TTGTCCAGGA AGGAGCTATT
GGCCTTGAAA GAGCTGTAGA TAAATTTGAT CCTGCTATGG GATATAAATT CTCAACTTAT
GCTTACTGGT GGATTAGGCA AGGAATGACA AGGGCTATTG ATAACAGTGC AAGAACAATC
CGTTTGCCTA TTCACATAAG TGAAAAACTC TCCAAAATGA GAAGAGTCTC TAGAGAATTA
TCACATAAAT TTGGTAGACA ACCTACCAGA TTGGAAATGG CAACTGAAAT GGGAATTGAT
CAAAAAGATT TAGAAGATTT AATTTCTCAA AGTGCTCCTT GCGCTTCCCT AGATGCTCAC
GCAAGAGGCG AAGAAGATAG AAGTACTCTT GGTGAACTCA TTCCTGATCC AAACTGTGAA
GAGCCTATGG AAGGTATGGA TAGAACTATT CAAAAAGAGC ATTTAGGAAC TTGGCTTTCT
CAATTAAATG AAAGAGAACA AAAAATAATG AAGCTCAGAT TTGGCCTAGA TGGTGAAGAA
CCATTAACAC TCGCAGAAAT AGGAAGACAA ATTAATGTTT CACGAGAAAG AGTAAGGCAA
CTAGAAGCTA AAGCAATATT AAAACTTAGA GTAATGACAA CTCATCAAAA AGCAGCTTAA
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| Protein sequence | MGIPLESAKS SSDNNFDEPR LPNTAGKSRK SKSSLTAKQS QKKSGRLASD SIGYYLSSIG
RVPLLTPAEE IELAHHVQNM KKLLQIPETD RTQRNLYQIK IGKRARDRMM AANLRLVVSV
AKKYQNQGLE LLDLVQEGAI GLERAVDKFD PAMGYKFSTY AYWWIRQGMT RAIDNSARTI
RLPIHISEKL SKMRRVSREL SHKFGRQPTR LEMATEMGID QKDLEDLISQ SAPCASLDAH
ARGEEDRSTL GELIPDPNCE EPMEGMDRTI QKEHLGTWLS QLNEREQKIM KLRFGLDGEE
PLTLAEIGRQ INVSRERVRQ LEAKAILKLR VMTTHQKAA
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