Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PMT9312_1698 |
Symbol | rimM |
ID | 3766523 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Prochlorococcus marinus str. MIT 9312 |
Kingdom | Bacteria |
Replicon accession | NC_007577 |
Strand | + |
Start bp | 1587084 |
End bp | 1587623 |
Gene Length | 540 bp |
Protein Length | 179 aa |
Translation table | 11 |
GC content | 25% |
IMG OID | 637798242 |
Product | 16S rRNA-processing protein RimM |
Protein accession | YP_398195 |
Protein GI | 78780083 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0806] RimM protein, required for 16S rRNA processing |
TIGRFAM ID | [TIGR02273] 16S rRNA processing protein RimM |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGATAAATA ATAATAAATG GCTGGTTGTT GGATTAATAA CATCATGTCA TGGAATTAAT GGACAATTAA AAGTTAAATC TTTAAGTGAT TTTGAAGAAA GATTTTTAAA ACCAGGAATT AGATGGTTGC AAAAAGAAAA TGAACCCCCT TCAAAAATAG AACTTACCTC TGGTTTCAAA CAGCCTGGGA AAGAAACCTT TATCATTAAG CTCCAAGGAA TAAATAATAG AAATCAAGCA GAGCGACTTA AAAAATGTAA AATTCTTGTA AAAACTAATA AACTACCAAA ATTAAAAAAG GAAGAATTCC ACTTGTTGGA ACTTATAAAT TTGGAAGTGA AGACTTTAGA AAATGAAGAA TTAAAAATAA TTGGGAAAGT TATTAATTTA GAAAATGAGA AAAATAATTT ACTTGTTGTT GAACTATTTA AAAATAAAAA AAAAGTTCTA ATACCATTTG TTAAAGAAAT TGTTCCATTA GTAGATATAA AAAATAATTT TCTAATCATC AATCCTCCAA ATGGACTTTT AGATCTATAA
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Protein sequence | MINNNKWLVV GLITSCHGIN GQLKVKSLSD FEERFLKPGI RWLQKENEPP SKIELTSGFK QPGKETFIIK LQGINNRNQA ERLKKCKILV KTNKLPKLKK EEFHLLELIN LEVKTLENEE LKIIGKVINL ENEKNNLLVV ELFKNKKKVL IPFVKEIVPL VDIKNNFLII NPPNGLLDL
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