Gene PMT9312_1698 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPMT9312_1698 
SymbolrimM 
ID3766523 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameProchlorococcus marinus str. MIT 9312 
KingdomBacteria 
Replicon accessionNC_007577 
Strand
Start bp1587084 
End bp1587623 
Gene Length540 bp 
Protein Length179 aa 
Translation table11 
GC content25% 
IMG OID637798242 
Product16S rRNA-processing protein RimM 
Protein accessionYP_398195 
Protein GI78780083 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0806] RimM protein, required for 16S rRNA processing 
TIGRFAM ID[TIGR02273] 16S rRNA processing protein RimM 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATAAATA ATAATAAATG GCTGGTTGTT GGATTAATAA CATCATGTCA TGGAATTAAT 
GGACAATTAA AAGTTAAATC TTTAAGTGAT TTTGAAGAAA GATTTTTAAA ACCAGGAATT
AGATGGTTGC AAAAAGAAAA TGAACCCCCT TCAAAAATAG AACTTACCTC TGGTTTCAAA
CAGCCTGGGA AAGAAACCTT TATCATTAAG CTCCAAGGAA TAAATAATAG AAATCAAGCA
GAGCGACTTA AAAAATGTAA AATTCTTGTA AAAACTAATA AACTACCAAA ATTAAAAAAG
GAAGAATTCC ACTTGTTGGA ACTTATAAAT TTGGAAGTGA AGACTTTAGA AAATGAAGAA
TTAAAAATAA TTGGGAAAGT TATTAATTTA GAAAATGAGA AAAATAATTT ACTTGTTGTT
GAACTATTTA AAAATAAAAA AAAAGTTCTA ATACCATTTG TTAAAGAAAT TGTTCCATTA
GTAGATATAA AAAATAATTT TCTAATCATC AATCCTCCAA ATGGACTTTT AGATCTATAA
 
Protein sequence
MINNNKWLVV GLITSCHGIN GQLKVKSLSD FEERFLKPGI RWLQKENEPP SKIELTSGFK 
QPGKETFIIK LQGINNRNQA ERLKKCKILV KTNKLPKLKK EEFHLLELIN LEVKTLENEE
LKIIGKVINL ENEKNNLLVV ELFKNKKKVL IPFVKEIVPL VDIKNNFLII NPPNGLLDL