Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PMT9312_1578 |
Symbol | rpoB |
ID | 3766395 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Prochlorococcus marinus str. MIT 9312 |
Kingdom | Bacteria |
Replicon accession | NC_007577 |
Strand | - |
Start bp | 1472142 |
End bp | 1475435 |
Gene Length | 3294 bp |
Protein Length | 1097 aa |
Translation table | 11 |
GC content | 38% |
IMG OID | 637798115 |
Product | DNA-directed RNA polymerase subunit beta |
Protein accession | YP_398074 |
Protein GI | 78779962 |
COG category | [K] Transcription |
COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.702205 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGCAGTA GCGCTTTACA GGTAGCAAAA ACAGGTACTT ATCTACCAGA TTTAGTTGAA GTACAAAGAG CAAGCTTTAA ATGGTTTTTG GAAAAGGGTT TAATAGAAGA ATTACAAAAC TTTTCGCCTA TTTCTGATTA CACAGGTAAA TTAGAATTGC ATTTTATTGG TGAAGAGTAC AGGCTAAAAA GACCTAGGCA CGATGTTGAA GAGGCAAAAA GAAGAGATGC AACATTTGCC TCACAAATGT ATGTCACTTG CAGATTGATT AATAAAGAGA CTGGAGAAAT TAAAGAACAA GAAGTTTTTA TCGGTGAATT ACCATTAATG ACCGAAAGAG GAACTTTTAT TATTAATGGT GCCGAAAGAG TAATTGTTAA TCAAATTGTT CGGAGTCCAG GAGTATATTT CAAAGATGAA CAGGATAAAA ATGGTCGAAG AACTTACAAC GCGAGTGTTA TTCCTAATAG AGGTGCATGG TTAAAATTCG AGACTGACAA AAATAATTTA CTTTATGTAA GAGTTGATAA AACTAGAAAA ATTAATGCTC ATGTTCTTAT GAGAGCTATG GGTCTTTCTG ATAATGATGT TGTCGATAAA CTTAGGCATC CTGAGTTTTA TCAAAACTCA ATTGAATCAG CTAATGACGA GGGGATAAAT TCTGAAGATC AGGCCTTACT TGAGCTCTAT AAGAAGCTTC GTCCTGGTGA ACCACCATCT GTCTCTGGTG GACAACAGCT ATTATTCAGT AGATTTTTTG ATCCCAAAAG ATATGATTTA GGCCGAGTTG GTAGATATAA AATAAATAAA AAGTTGAGGC TCACAGTACC AGATGATGTG AGGACACTTA CTCATGAAGA TGTTCTTTCT ACAATTGATT ATTTAATTAA CCTAGAATTG GATATTGGTG GTGCGAGTTT GGATGATATT GATCACTTAG GTAATCGAAG GGTTAGATCT GTAGGAGAAC TTCTTCAAAA TCAAGTGAGG GTTGGGCTTA ACCGTTTAGA GAGAATTATT AAAGAAAGAA TGACTGTTGG TGAAACAGAT TCTCTGACTC CTGCTCAACT AGTCAATCCT AAACCTTTGG TTGCTGCCAT AAAAGAGTTT TTTGGATCCA GTCAATTAAG TCAATTTATG GATCAAACTA ATCCTCTAGC TGAATTAACA CATAAAAGAA GAATCTCAGC CTTAGGTCCT GGAGGTTTAA CAAGAGAAAG AGCAGGCTTT GCTGTAAGAG ATATACATCC TTCACATTAT GGGAGATTAT GTCCTATTGA AACTCCTGAA GGTCCTAATG CAGGTCTTAT AAACTCTTTA GCTACCCACG CAAGAGTAAA TGAGTATGGT TTTATTGAAA CTCCGTTTTG GAAAGTTAAT AACGGTAAAG TCAATAAAGA CGGTGATCCT ATTTATCTTT CGGCTGATCT AGAGGATGAG TGCAGGGTCG CCCCAGGAGA TGTTGCAACT GACAAGGATG GAAATATTCT TGCAAATTTA ATACCCGTAA GATACAGGCA AGATTTTGAA AAAGTACCTC CTGAGCAAGT TGATTATGTT CAACTTTCCC CTGTTCAGGT AATTTCAGTT GCAACTTCAC TTATCCCTTT CTTGGAACAT GATGATGCAA ATAGAGCTTT GATGGGATCT AATATGCAGC GCCAGGCTGT TCCATTGCTT AGGCCAGAAC GTCCTTTAGT TGGTACAGGT TTAGAATCAC AAGTTGCTAG AGATTCGGGA ATGGTTCCTA TCACAAAAGT TAATGGAACT GTATCTTATG TAGACGCTAA TGAGATTGTT GTTAAGGGCG AGGATGGTAA TGAACATTTT CATTATCTTC AAAAATATCA AAGATCAAAT CAAGATACTT GTCTAAATCA AAGACCAATT GTAAACATTG GAGATCAAGT TATATCTGGC CAAGTGCTAG CAGATGGATC TGCATGTGAA GGAGGGGAAA TAGCACTAGG ACAGAATGTC TTAATTGCAT ATATGCCATG GGAGGGCTAC AACTACGAAG ATGCTATTCT TGTTAGTGAG AGGATGGTCA CTGATGATTT GTATACATCA GTACATATTG AAAAATATGA AATTGAGGCA AGACAAACAA AACTAGGGCC TGAAGAAATT ACAAGAGAGA TTCCCAATAT TTCTGAAGAT AGCTTGAACA ATCTTGATGA AATGGGAATA ATCAGGATTG GCGCTTTTGT TGAAAGTGGT GATATTTTGG TAGGAAAAGT TACCCCAAAA GGCGAATCAG ATCAACCACC TGAAGAAAAA CTTTTGAGAG CTATTTTCGG AGAAAAGGCT CGAGATGTTA GAGACAACTC CTTGCGGGTT CCGAAGACAG AAAAAGGAAG GGTTCTAGAT GTTCGAATAT ATACTAGAGA ACAGGGTGAT GAGCTACCTC CAGGCGCAAA TATGGTTGTT AGAGTTTATG TAGCCCAGAG AAGAAAAATA CAGGTAGGCG ATAAAATGGC TGGAAGACAT GGCAATAAAG GAATTATAAG TAGAATCCTG CCAAGAGAGG ATATGCCTTA TTTACCTGAC GGAACACCTG TAGACATAGT TCTTAATCCC TTGGGAGTTC CAAGTAGGAT GAATGTAGGT CAAGTTTTTG AATTATTGAT GGGCTGGGCA GCTTCCAACT TAAATTGTAG GGTTAAAGTT GTCCCATTTG ATGAAATGTA TGGTGCTGAA AAATCACATC AGACTGTTCA AGCATTTTTA GAGGAAGCTT CAAAACAGCC AGGTAAAGCA TGGATTTATA ATCCTGAAGA TCCTGGAAAG TTATTACTTA AAGATGGTAG AACTGGTGAA CCTTTTGATC AGCCAGTTGC GGTTGGATAT TCTCATTTCC TTAAGTTAGT GCATTTAGTG GATGACAAAA TTCATGCAAG GTCTACTGGT CCTTACTCTT TGGTTACTCA ACAGCCTTTG GGCGGTAAAG CTCAGCAAGG TGGACAAAGG CTTGGAGAAA TGGAAGTTTG GGCTCTTGAA GCTTATGGAG CAGCCTATAC TCTTCAAGAA CTATTAACAG TTAAATCTGA TGATATGCAA GGAAGAAATG AAGCTCTTAA TGCAATAGTG AAGGGTAAAC CAATCCCTAG GCCTGGTACT CCTGAATCAT TCAAAGTTCT AATGAGAGAG TTACAATCTC TAGGTCTAGA TATTGGGGTT TATACAGATG AAGGAAAAGA GGTGGATTTA ATGCAAGATA TAAATCCGAG AAGGAATACT CCATCGAGGC CGACTTACGA ATCACTAGGA ACCTCTGAAT ATGAGGAAGA TTAA
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Protein sequence | MSSSALQVAK TGTYLPDLVE VQRASFKWFL EKGLIEELQN FSPISDYTGK LELHFIGEEY RLKRPRHDVE EAKRRDATFA SQMYVTCRLI NKETGEIKEQ EVFIGELPLM TERGTFIING AERVIVNQIV RSPGVYFKDE QDKNGRRTYN ASVIPNRGAW LKFETDKNNL LYVRVDKTRK INAHVLMRAM GLSDNDVVDK LRHPEFYQNS IESANDEGIN SEDQALLELY KKLRPGEPPS VSGGQQLLFS RFFDPKRYDL GRVGRYKINK KLRLTVPDDV RTLTHEDVLS TIDYLINLEL DIGGASLDDI DHLGNRRVRS VGELLQNQVR VGLNRLERII KERMTVGETD SLTPAQLVNP KPLVAAIKEF FGSSQLSQFM DQTNPLAELT HKRRISALGP GGLTRERAGF AVRDIHPSHY GRLCPIETPE GPNAGLINSL ATHARVNEYG FIETPFWKVN NGKVNKDGDP IYLSADLEDE CRVAPGDVAT DKDGNILANL IPVRYRQDFE KVPPEQVDYV QLSPVQVISV ATSLIPFLEH DDANRALMGS NMQRQAVPLL RPERPLVGTG LESQVARDSG MVPITKVNGT VSYVDANEIV VKGEDGNEHF HYLQKYQRSN QDTCLNQRPI VNIGDQVISG QVLADGSACE GGEIALGQNV LIAYMPWEGY NYEDAILVSE RMVTDDLYTS VHIEKYEIEA RQTKLGPEEI TREIPNISED SLNNLDEMGI IRIGAFVESG DILVGKVTPK GESDQPPEEK LLRAIFGEKA RDVRDNSLRV PKTEKGRVLD VRIYTREQGD ELPPGANMVV RVYVAQRRKI QVGDKMAGRH GNKGIISRIL PREDMPYLPD GTPVDIVLNP LGVPSRMNVG QVFELLMGWA ASNLNCRVKV VPFDEMYGAE KSHQTVQAFL EEASKQPGKA WIYNPEDPGK LLLKDGRTGE PFDQPVAVGY SHFLKLVHLV DDKIHARSTG PYSLVTQQPL GGKAQQGGQR LGEMEVWALE AYGAAYTLQE LLTVKSDDMQ GRNEALNAIV KGKPIPRPGT PESFKVLMRE LQSLGLDIGV YTDEGKEVDL MQDINPRRNT PSRPTYESLG TSEYEED
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