| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PMT9312_1385 |
|---|
| Symbol | |
|---|
| ID | 3766197 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Prochlorococcus marinus str. MIT 9312 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007577 |
|---|
| Strand | - |
|---|
| Start bp | 1299429 |
|---|
| End bp | 1300370 |
|---|
| Gene Length | 942 bp |
|---|
| Protein Length | 313 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 36% |
|---|
| IMG OID | 637797918 |
|---|
| Product | type II alternative sigma-70 family RNA polymerase sigma factor |
|---|
| Protein accession | YP_397881 |
|---|
| Protein GI | 78779769 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
|---|
| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02997] RNA polymerase sigma factor, cyanobacterial RpoD-like family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGTTTCAA CATTAGGAGT TCCAGCAGAA CCACCAAAGA GAAGAGGTAA TGATCCGATA
AGCTGGTATT TGCAAAATAT CGGTAGGGTT CCTTTGTTAA CTCCTGCTGA AGAGATTGAA
TTGGGCAATC AAGTTCAGAA AATGATGATT CTCACCGAGG ATGGTCAATT AAATGAAAAA
ATTAAAGAAT TTACAACGCA GCAAAAAAGA ATAATAAAAA TTGGTAGAAG AGCTAAAGAG
AGAATGATGA AAGCTAATTT AAGATTAGTT GTCAGTGTCG CAAAAAAATA TCAGGGCAAA
GGACTCGAAC TTCTTGATTT AGTTCAAGAA GGATCTCTTG GTTTGGAGAG GGCTGTTGAA
AAATTTGATC CTACAAGAGG ATATAAGTTT TCTACTTACG CTTTTTGGTG GATCCGACAA
AGTATGACAA GAGCAATTGC TTGTCAATCA AGAACAATCC GTTTACCAGT TCATTTAAGC
GAAAGATTAG CCGCTATACG AAAAGTTAGT AGGGAATTAG CTCACAAACT TGGTGCGATG
CCAAGCAGAA TTGAAATTGC AGAAGCAATG GATATTGATG TTGAAGAATT AGATTCTGTC
TTAAGACAAG CTTTATCAAC AAGTAGTTTA GATGCTCCAG TTAATGGTGA TGATGGCAGG
AGCTTTTTAG GTGATTTAAT AGCAGATAGT AATACTGAAG AGCCTTTAGA TAAAGTTGAA
CAGAAAATGC ATCAAGAACA ACTTGGGAAG TGGTTAAGCC ATCTAAGCGA GCAAGAGCAA
CATGTTCTTA AATTAAGGTT TGGGCTAGAT GGGAATGAAA GACATACTCT TGCTGAAATA
GGAAGATTAT TAGAAGTTTC TAGGGAAAGA GTTAGACAAG TTGAACTAAA GGCATTAAGA
AAATTAAGAA ATTTAACCAG AAAATTACCC AGTGGGATTT AA
|
|---|
| Protein sequence | MVSTLGVPAE PPKRRGNDPI SWYLQNIGRV PLLTPAEEIE LGNQVQKMMI LTEDGQLNEK
IKEFTTQQKR IIKIGRRAKE RMMKANLRLV VSVAKKYQGK GLELLDLVQE GSLGLERAVE
KFDPTRGYKF STYAFWWIRQ SMTRAIACQS RTIRLPVHLS ERLAAIRKVS RELAHKLGAM
PSRIEIAEAM DIDVEELDSV LRQALSTSSL DAPVNGDDGR SFLGDLIADS NTEEPLDKVE
QKMHQEQLGK WLSHLSEQEQ HVLKLRFGLD GNERHTLAEI GRLLEVSRER VRQVELKALR
KLRNLTRKLP SGI
|
|---|
| |