Gene PMT9312_1292 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPMT9312_1292 
Symbol 
ID3766100 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameProchlorococcus marinus str. MIT 9312 
KingdomBacteria 
Replicon accessionNC_007577 
Strand
Start bp1198352 
End bp1200517 
Gene Length2166 bp 
Protein Length721 aa 
Translation table11 
GC content40% 
IMG OID637797821 
Productpolynucleotide phosphorylase/polyadenylase 
Protein accessionYP_397787 
Protein GI78779675 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG1185] Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) 
TIGRFAM ID[TIGR03591] polyribonucleotide nucleotidyltransferase 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGGAAGGAC AAAATAAGTC GATCACGTTT GACGGACGAG AGATACGACT AACTACAGGA 
CTATATGCTC CTCAAGCAAA TGGATCAGTA ATGATTGAGT GTGGGGACAC CTCGTTATTA
GTTACAGCAA CAAAAACGAC TAAGAAAGAG GTTGCAGACT TTCTACCTCT TATATGCGAC
TATGAGGAAA AACTTTATGC TGCAGGGAGG ATTCCAGGTG GTTTTATGAG GAGAGAGGGT
CGCCCTCCAG AAAGAGCGAC TTTAATTTCA AGGTTGATTG ATAGGCCAAT GAGGCCGCTT
TTCCCTTCAT GGATGCGAGA CGAGATACAA ATAGTTGCTT CATGCCTTTC TTTAGATGAA
AGGGTTCCAG CAGATGTTTT AGCTGTTACT GGAGCTTCAA TAGCAACTTT ACTTGGAGAG
ATACCATTTC ATGGGCCAAT GGCAGCTGTT AGAGTTGGGC TCATAGGAGA TGATTTCATC
TTAAATCCAA GCTATAGAGA GATAGAGAAA GGAGATTTAG ACATTGTTGT TGCAGGATCA
CCTGACGGCA TTGTTATGAT TGAAGCAGGT GCTAACCAAT TATCAGAGCA AGATACTATT
GAAGCTATAG ATTTTGGTTA TGAGTCAGTA ACTGAACTAA TTAAATCTCA AGTAGATTTA
CTAAAAGATT TAGGTATAAA ACAGGTTAAG TCATCGGCTC CCGAAGAAGA TAATACATTG
CCCTCTTATT TAGAGAAGAA TTGTACAAAG GGAATTGAGT TGGTTTTAAA GAAATTTGAC
CAGTCTAAAG ATGAGAGAGA TCTTGAACTC GAAAAAATAA AAGTTGATAC TCAAGCTAAA
ATTGAATCTT TGAAAGATGA TAACGAATTA AAAGTTCTTC TTTCAGAGAA TGATAAGTTG
TTAAGTTCCG ACTTCAAAAA ACTTACAAAG AAATTAATGA GGTCCCAAAT CATTAATGAT
GGCAAACGAG TTGATGGCCG TGAATTAGAT GAAGTGAGAA AAATTTCAGC ATCTGCTGGG
ATACTTCCAA AAAGGGTTCA TGGTTCAGCC TTATTTCAAA GAGGGTTGAC TCAAGTCTTA
TCAACGACAA CTTTGGGAAC GCCAAGTGAC GCACAGGAAA TGGACGACCT TAATCCAAGC
ACTGAAAAAA CTTATCTGCA TCACTATAAT TTCCCACCTT TTTCAGTTGG GGAAACCAGA
CCCATGAGAA CCCCTGGCAG AAGAGAGATT GGCCATGGAG CTTTAGCAGA GAGAGCGATA
ATTCCTGTTC TTCCGGGGAA AGAAACATTC CCATATGTAT TAAGGGTTGT TAGCGAAGTT
TTAAGTTCGA ACGGATCAAC TTCCATGGGT TCTGTATGTG GAAGTACACT TTCGTTATTA
GATGCAGGAG TTCCTTTAAA AGCCCTTGTC AGTGGTACTG CTATGGGTTT AATCAAAGAA
GGGAAGGAGA TCAGAATTCT CACGGATATT CAAGGGATCG AGGACTTTCT TGGGGACATG
GACTTTAAAG TTGCTGGTAC AGAAAAGGGG ATAACAGCAT TACAAATGGA TATGAAAATT
ACAGGTTTGT CCGTTTCCGT TATTTCTGAT GCAATCAAAA AAGCTCGTCC TGCAAGATTA
CACATCTTAG AAAAAATGCA AGAGGCAATA GATAAACCTC AAGAATCCTT ATCTCCCCAC
GCACCAAGAC TTTTAAGCTT TAGGATTGAT CCAGAGCTCA TTGGGACAGT CATTGGACCT
GGTGGAAGAA CCATTAAAGG AATTACCGAA AGAACAAATA CAAAAATCGA TATTGAAGAT
GGGGGAATTG TAACCATCGC ATCACATGAT GGCGCTGCGG CTGAAGAAGC GCAGAAGATA
ATAGAAGGAT TAACTAGAAA AGTCCACGAA GGTGAAATTT TCACTGGAGT TGTCACTCGA
ATAATTCCGA TTGGAGCATT TGTTGAAATT CTCCCTGGTA AGGAGGGAAT GGTTCATATA
TCCCAATTAT CTGAAGCGAG AGTTGAAAGG GTGGAAGATG TTGTAAGACA AGGTGATGAA
GTAACTGTAA GGGTTCGTGA AATTGATAGC AGAGGTAGGA TCAATCTTAC TTTGAGGGGA
GTTTCACAAA ATAGTGGGAT GTCTTATCCT GAGCCAACAC CTACGCCAGT AGCACCTTTA
AACTAA
 
Protein sequence
MEGQNKSITF DGREIRLTTG LYAPQANGSV MIECGDTSLL VTATKTTKKE VADFLPLICD 
YEEKLYAAGR IPGGFMRREG RPPERATLIS RLIDRPMRPL FPSWMRDEIQ IVASCLSLDE
RVPADVLAVT GASIATLLGE IPFHGPMAAV RVGLIGDDFI LNPSYREIEK GDLDIVVAGS
PDGIVMIEAG ANQLSEQDTI EAIDFGYESV TELIKSQVDL LKDLGIKQVK SSAPEEDNTL
PSYLEKNCTK GIELVLKKFD QSKDERDLEL EKIKVDTQAK IESLKDDNEL KVLLSENDKL
LSSDFKKLTK KLMRSQIIND GKRVDGRELD EVRKISASAG ILPKRVHGSA LFQRGLTQVL
STTTLGTPSD AQEMDDLNPS TEKTYLHHYN FPPFSVGETR PMRTPGRREI GHGALAERAI
IPVLPGKETF PYVLRVVSEV LSSNGSTSMG SVCGSTLSLL DAGVPLKALV SGTAMGLIKE
GKEIRILTDI QGIEDFLGDM DFKVAGTEKG ITALQMDMKI TGLSVSVISD AIKKARPARL
HILEKMQEAI DKPQESLSPH APRLLSFRID PELIGTVIGP GGRTIKGITE RTNTKIDIED
GGIVTIASHD GAAAEEAQKI IEGLTRKVHE GEIFTGVVTR IIPIGAFVEI LPGKEGMVHI
SQLSEARVER VEDVVRQGDE VTVRVREIDS RGRINLTLRG VSQNSGMSYP EPTPTPVAPL
N