| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PMT9312_1196 |
|---|
| Symbol | |
|---|
| ID | 3766003 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Prochlorococcus marinus str. MIT 9312 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007577 |
|---|
| Strand | - |
|---|
| Start bp | 1117237 |
|---|
| End bp | 1117860 |
|---|
| Gene Length | 624 bp |
|---|
| Protein Length | 207 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 30% |
|---|
| IMG OID | 637797724 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_397691 |
|---|
| Protein GI | 78779579 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4970] Tfp pilus assembly protein FimT |
|---|
| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.00498598 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGGTTGC CAAAAAATAA AATAATAAAC TGCAAAGGTT TTAGTCTTTT AGAATTGATA
GTTGCTATAA GTATCATTTC AATAACCTCC TCATTTGTTA TCCCTTATTC TTTAACTTGG
CTTAGAACGG AAAAGGTAAA TGCTTATACA AGAGAACTTT CTGAATTCTT TAGATTAATT
AGATTAGAGG CAAGGAGATG GGGATCTAGC TGCTTTATTT ATACAAATAG TTTTGATTAT
GAATCTATTC GTGATGATAA AAAATATATG GGTTTTGTAG TGAATTGTAA ATATACTTCA
ACGCCTTACG ATAGTTCAAA AATGAATGTA GGAAGGATTC AAGAATTGGT TCCAGCATTA
AACAATTCTT TTTTTCAAGT TGTAAATAAT AATTTTCAAG TTACTCCAAA TGGAAGGATA
TCAGCCTCAA AACCAATAGT TGTAGTTATA GGTTCTAAGT ACCACAAAAC AAGACCAAAA
ATTTTAAATT GCATTACGAT AAATATCCCT ACAGGTCAAA TAAAAAAAGG GAAATTCAAT
ACAAATTCTT GGTTATTGGA TAATATGCCT GTAAGCCAAT TATCGAGTAA CGGGATTCTT
ACTCCCGAAA GATGCGAATT CTAA
|
|---|
| Protein sequence | MRLPKNKIIN CKGFSLLELI VAISIISITS SFVIPYSLTW LRTEKVNAYT RELSEFFRLI
RLEARRWGSS CFIYTNSFDY ESIRDDKKYM GFVVNCKYTS TPYDSSKMNV GRIQELVPAL
NNSFFQVVNN NFQVTPNGRI SASKPIVVVI GSKYHKTRPK ILNCITINIP TGQIKKGKFN
TNSWLLDNMP VSQLSSNGIL TPERCEF
|
|---|
| |