| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PMT9312_1019 |
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| Symbol | |
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| ID | 3765823 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Prochlorococcus marinus str. MIT 9312 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007577 |
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| Strand | + |
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| Start bp | 940333 |
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| End bp | 941340 |
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| Gene Length | 1008 bp |
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| Protein Length | 335 aa |
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| Translation table | 11 |
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| GC content | 32% |
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| IMG OID | 637797544 |
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| Product | dihydrouridine synthase TIM-barrel protein nifR3 |
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| Protein accession | YP_397515 |
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| Protein GI | 78779403 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0042] tRNA-dihydrouridine synthase |
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| TIGRFAM ID | [TIGR00737] putative TIM-barrel protein, nifR3 family
[TIGR00742] tRNA dihydrouridine synthase A |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.192901 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCTTCAG ATATAAAGAT AAAAGGAAGG GGAGTTAACA GGATAATTAA GAGTAAGGTG
ATGCTATCGC CCTTAGCAGG GGTTACAGAT AACATTTTTA GGCGACTTGT TCGTAAATGG
GCTCCTAACT CTTTACTTTT TACAGAAATG ATAAATGCCA CGAGTCTTAA AAAAGGATTT
GGAACACAAA AAATCAATCA AATAAATTTA GAAGAAGGTC CAGTAGGAGT TCAAATATTT
GATAATAGAC CATATGCTGT TTCTGAAGCC GCTAAACAAG CTGAGGACTC TGGAGCTTTC
TTAATTGATA TAAATATGGG ATGTCCAGTA AAAAAGATTG CAAAGAAAGG TGGAGGCAGT
GCCTTAATTA AAGACCGTAA ACTTGCTATA GAATTAGTCA AAAATGTCGT AAAAGCTGTA
AAAATTCCAG TTACAGTAAA AACTCGACTC GGATGGGATA GTAAAGAAGA AAATATAGAA
GATTTTTTAT TTAAGCTTCA AGATGCGGGA GCAACAATGA TCACACTTCA TGGAAGAACT
AGAAAACAAG GTTTTTCAGG TAAATCAGAT TGGGAAATGA TCGGGAGACT TAAAAAGTTA
TTGGAAATTC CAGTAATTGC TAATGGAGAT ATCAAAAATC CAGATGACGC TCTTAATTGT
TTAAATAAAA CAAATGCAGA TGGTGTAATG ATTGGACGAG GGATTTTAGG ATCTCCATGG
AAATTAGGAG AAATAGATTA TGCCATTAAA GAAAATAAAA ATTTTAAAGA ACCAAACGCA
GAAGAAAAAC TATATTTAAT TATTGAGCAC CTTGATGAAT TAATAAAAGA AAAAGGAGAT
CACGGTTTGC TAATTGCTAG GAAGCATATT TCATGGACAT GCAAAGATTT TAAGGGTGCA
TCAAATTTGC GAAATAACCT GGTTAGAGCT GTTGATAAAA ATGAAGTTAA AAATTTAATA
AATAAAATGA TTAAAACTTT GAATAAAGAA AAAAATAGAT TAGCTTAA
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| Protein sequence | MSSDIKIKGR GVNRIIKSKV MLSPLAGVTD NIFRRLVRKW APNSLLFTEM INATSLKKGF
GTQKINQINL EEGPVGVQIF DNRPYAVSEA AKQAEDSGAF LIDINMGCPV KKIAKKGGGS
ALIKDRKLAI ELVKNVVKAV KIPVTVKTRL GWDSKEENIE DFLFKLQDAG ATMITLHGRT
RKQGFSGKSD WEMIGRLKKL LEIPVIANGD IKNPDDALNC LNKTNADGVM IGRGILGSPW
KLGEIDYAIK ENKNFKEPNA EEKLYLIIEH LDELIKEKGD HGLLIARKHI SWTCKDFKGA
SNLRNNLVRA VDKNEVKNLI NKMIKTLNKE KNRLA
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