| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PMT9312_0893 |
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| Symbol | |
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| ID | 3765694 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Prochlorococcus marinus str. MIT 9312 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007577 |
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| Strand | + |
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| Start bp | 825089 |
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| End bp | 826978 |
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| Gene Length | 1890 bp |
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| Protein Length | 629 aa |
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| Translation table | 11 |
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| GC content | 35% |
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| IMG OID | 637797415 |
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| Product | 1-deoxy-D-xylulose-5-phosphate synthase |
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| Protein accession | YP_397389 |
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| Protein GI | 161350036 |
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| COG category | [H] Coenzyme transport and metabolism
[I] Lipid transport and metabolism |
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| COG ID | [COG1154] Deoxyxylulose-5-phosphate synthase |
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| TIGRFAM ID | [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTTTTAA GTGAGTTAAG CCATCCGAAT GAACTACATG GCTTAACAGT TTCACAATTA
GAGGAAATTG CTTGTCAAAT TAGAGAAAGA CATCTCCAAG TAGTATCTAC AAGTGGTGGA
CACCTTGGCC CTGGATTAGG TGTAGTCGAA TTGACATTGG CTTTATATCA AACTCTAGAT
CTTGATAGCG ACAGGGTTGT TTGGGATGTT GGTCATCAAG GTTATCCTCA TAAATTAATA
ACAGGTCGTT TCAGTCAATT TGATTCACTT AGACAACAAA ATGGAGTAGC AGGATATCTT
AAAAGAAGTG AAAGTAAATT TGACCATTTT GGTGCAGGTC ATGCAAGTAC ATCAATTTCA
GCTGCTTTAG GAATGGCAAT AGCAAGAGAT AGAAAAGGTG AAAATCATAA ATGTGTAGCA
GTTATAGGAG ATGGAGCATT AACTGGTGGA ATGGCTTTAG AAGCTATAAA TCATGCCGGA
CATTTACCTA ATACTCCATT AGTTGTAGTT TTAAATGATA ATGACATGTC AATATCGCCT
CCAGTTGGAG CACTTTCTTC TTATTTAAAT AAAGTTAGAC TTAGTCCTCC ATTACAATTT
TTATCAGATA GTGTGCAGGA AAGTGTAAAA AATATTCCGT TAATTGGTAA GGATATTCCA
GAAGAATTAA AAAATATTAA GGGCAGTGTG AGACGTTTAG CTGTTCCTAA GGTTGGAGCA
GTTTTTGAAG AACTCGGATT TACATATATG GGCCCAATTG ATGGTCATGA TATTGAAAAT
TTAATTAATA CATTTAATGC TGCGCATAGA CTTAAAAAAC CTGTTCTCGT TCATATTGTT
ACAACAAAGG GTAAGGGTTA TCCTTATGCA GAAGCAGATC AAGTTGGATA CCATGCTCAG
TCTGCATTTG ACCTGACGAC AGGTAAATCT ATCCCATCAA AAAAACCAAA GCCCGTAAGT
TATAGCAAAA TATTTGGTCA AACATTATTA AAAATATGTG AACAAGATAG CAAAGTTATT
GGTATAACAG CAGCTATGGC TACTGGCACA GGATTAGATA TATTGCAAAA GAATATTCCA
GAGCAATACG TTGATGTAGG CATAGCTGAG CAGCATGCAG TTACTCTTGC CGCAGGAATG
TCGTGCGATG GTCTTAAACC TGTTGTTGCT ATTTATAGCA CTTTCCTGCA ACGTGCTTTT
GATCAATTAA TTCATGATGT AGGGATACAA AATTTACCTG TATCTTTTGT ACTTGATAGA
GCTGGAATTG TTGGAGCTGA CGGCCCTACT CACCAAGGGC AATACGATAT TAGTTATATG
AGATCCATAC CAAATTTTGT CTTAATGGCC CCAAAAGATG AGTCTGAATT GCAGAGAATG
TTAATAACAT CAATTAACCA TAAGGGACCT ACAGCATTAA GAATACCTAG AGGTTCTGGA
TTAGGTGTTG CTGTAATGGA TGAAGGTTGG GAACCATTGA ATATAGGTGA GGCTGAAATA
CTAGAAGAGG GAAATGATAT TTTAATTATT GCTTATGGAT CAATGGTCGC TTCAGCTATT
GAAACAGCAG AGATATTAAA AGGTATGAAC ATTAATACTT GTATTGTAAA TGCAAGATTT
GTTAAACCTC TCGATAAAAA TCTTATTATT CCTTTGGCAA GTAGGATTCA AAAAGTGGTA
ACGATGGAAG AAGGAACCTT AATAGGTGGT TTTGGTTCAG CTATCGTTGA ATTATTTAAC
GATAATGAAG TAAATATTCC TGTATATAGA ATAGGTATAC CTGATGTTTT AGTTGATCAT
GCATCACCTG ATCAGAGTAA AGAAAAATTA GGTCTTATGC CTGATCAGAT GGCAGATAAA
ATAATTCAGA AATTTAAATT AAATAATTAA
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| Protein sequence | MLLSELSHPN ELHGLTVSQL EEIACQIRER HLQVVSTSGG HLGPGLGVVE LTLALYQTLD
LDSDRVVWDV GHQGYPHKLI TGRFSQFDSL RQQNGVAGYL KRSESKFDHF GAGHASTSIS
AALGMAIARD RKGENHKCVA VIGDGALTGG MALEAINHAG HLPNTPLVVV LNDNDMSISP
PVGALSSYLN KVRLSPPLQF LSDSVQESVK NIPLIGKDIP EELKNIKGSV RRLAVPKVGA
VFEELGFTYM GPIDGHDIEN LINTFNAAHR LKKPVLVHIV TTKGKGYPYA EADQVGYHAQ
SAFDLTTGKS IPSKKPKPVS YSKIFGQTLL KICEQDSKVI GITAAMATGT GLDILQKNIP
EQYVDVGIAE QHAVTLAAGM SCDGLKPVVA IYSTFLQRAF DQLIHDVGIQ NLPVSFVLDR
AGIVGADGPT HQGQYDISYM RSIPNFVLMA PKDESELQRM LITSINHKGP TALRIPRGSG
LGVAVMDEGW EPLNIGEAEI LEEGNDILII AYGSMVASAI ETAEILKGMN INTCIVNARF
VKPLDKNLII PLASRIQKVV TMEEGTLIGG FGSAIVELFN DNEVNIPVYR IGIPDVLVDH
ASPDQSKEKL GLMPDQMADK IIQKFKLNN
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