| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PMT9312_0870 |
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| Symbol | secD |
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| ID | 3765671 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Prochlorococcus marinus str. MIT 9312 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007577 |
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| Strand | + |
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| Start bp | 803940 |
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| End bp | 805409 |
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| Gene Length | 1470 bp |
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| Protein Length | 489 aa |
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| Translation table | 11 |
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| GC content | 30% |
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| IMG OID | 637797392 |
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| Product | preprotein translocase subunit SecD |
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| Protein accession | YP_397366 |
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| Protein GI | 78779254 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0342] Preprotein translocase subunit SecD |
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| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.451271 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAAGAA GGCAAGGTTG GCTTTTTTTT ATTTTATTTC TACTTACTTT ATCTGTTTAT
CTATTAATAA ATTATCCCTT ACAGTTGGGA TTGGATTTAC AAGGGGGTTC TCAACTTACA
CTACAAATTA TTAAAGAGGA AGGTAAGGTA ACAAGGGATG AACTTGAAGC AGTTAATTCG
GTTATAGATA AGCGCGTTAA CAATTTAGGA GTTTCTGAGT CTAATTTGCA AACCCTCGGT
GGAGATCAAT TGATTTTAGA ATTACCAGGT GAACAAAATC CATTAGTTGC TTCAAGGGTA
TTAGGTAAGA CTGCTTTATT AGAATTTAGA ACCCAAAAAG AAGGAACATC TACAGATTTA
AAATCACTGC AACTACAGAG ATTTAGTATT AAAGAATTAA TTGAACAATA TTCCTTTGCA
GAAAAAAATC AAAATGATGA TAATTTCTTA AAAGTTATTC AAGATAATCT TAAAGAAATA
GAGCAAGAAT TGAATTACTC ATCTACTAAT AATGATTTAT ATGGGAAGTT AATTGAAATC
AAAAAATATG TTGATAAAGA AATTACAAAT TTATTTATTA AAACAGATTT ATCTGGTAAG
GATCTTATTA ACGCAGGAAG GAGACAAGAA CAAACAAATA ATAATTGGGA AGTTTTATTG
ACTTTTAGTA ATTCAGGAGG TGAAAAGTTT GCAGAAATCA CAAAGTCAAT CGCTGGCACT
AATCAACTAT TGGCTATCAT TTTAGATGGT GAATCAATAA GTGAAGCCAG TGTTGGTAAT
CAGTTCGCTA GTACTGGGAT TACAGGTGGA TCGGCAACAA TAAGCGGTAA TTTTAGCGCT
GAAAATGCTA GAGAATTAGA AGTTCAACTT AAAGGAGGCT CATTGCCATT GCCAATTGAA
ATAGTAGAAA CTAACACTAT AGGGGCTCTA TTGGGATCCA AAAATATTTT AAAAAGTCTT
TATGCAGCTA TTAGTGGATT AATTTTTGTT GGTATATTTA TGATTTTTAA TTATAGAATT
CTAGGTTTCG TTTCAGTTCT ATCTCTAGTA CTTTATGGTT TCTTTAACTT AGCCCTATAT
TCTTTAATTC CTGTAACTTT GACTTTACCT GGAATATCTG GGCTTATACT TAGCATTGGT
ATGGCTGTTG ATGCAAATAT TTTAATATTT GAGAGAATTA GAGAAGAATT ATATGATGGC
AATACTCTTA CAAGATCTAT TGATAGCGGT TTTCAGAGAG CTAATTCATC CATAGTTGAT
GGTCATATTA CAACTCTTCT AAGTTGTTTT GTATTGTTTT TATTAGGAAC AAATTTTGTT
AAAGGTTTTG CGGCAACATT AGGTATTGGA GTTCTAATAA GCTTGTTTAC CTCATTAAAT
TGTTCTAAAA CTATTTTGCG ATTTTTTACA ACTTATCAAT CTTTAAGACA AAAAAATCTC
TATCTACCCA AGAATAATTT TTCAAATTAA
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| Protein sequence | MKRRQGWLFF ILFLLTLSVY LLINYPLQLG LDLQGGSQLT LQIIKEEGKV TRDELEAVNS
VIDKRVNNLG VSESNLQTLG GDQLILELPG EQNPLVASRV LGKTALLEFR TQKEGTSTDL
KSLQLQRFSI KELIEQYSFA EKNQNDDNFL KVIQDNLKEI EQELNYSSTN NDLYGKLIEI
KKYVDKEITN LFIKTDLSGK DLINAGRRQE QTNNNWEVLL TFSNSGGEKF AEITKSIAGT
NQLLAIILDG ESISEASVGN QFASTGITGG SATISGNFSA ENARELEVQL KGGSLPLPIE
IVETNTIGAL LGSKNILKSL YAAISGLIFV GIFMIFNYRI LGFVSVLSLV LYGFFNLALY
SLIPVTLTLP GISGLILSIG MAVDANILIF ERIREELYDG NTLTRSIDSG FQRANSSIVD
GHITTLLSCF VLFLLGTNFV KGFAATLGIG VLISLFTSLN CSKTILRFFT TYQSLRQKNL
YLPKNNFSN
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