Gene PMT9312_0854 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPMT9312_0854 
SymboldnaE 
ID3765655 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameProchlorococcus marinus str. MIT 9312 
KingdomBacteria 
Replicon accessionNC_007577 
Strand
Start bp789211 
End bp792708 
Gene Length3498 bp 
Protein Length1165 aa 
Translation table11 
GC content33% 
IMG OID637797376 
ProductDNA polymerase III subunit alpha 
Protein accessionYP_397350 
Protein GI78779238 
COG category[L] Replication, recombination and repair 
COG ID[COG0587] DNA polymerase III, alpha subunit 
TIGRFAM ID[TIGR00594] DNA-directed DNA polymerase III (polc) 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGGTTTCA TTCCACTTCA TAATCATAGT GATTACAGTC TTCTTGATGG GGCAAGTCAA 
ATTTCTAAAA TTGTAGATAG AGCTTGCGAA CTTGGAATGG ATTCTATTGC CCTGACAGAT
CATGGAGTTA TGTATGGAGT TCTTGATTTG GTCAAGAAGT GTAAGGAGAA AGGTATAAAA
CCAATTATTG GTAATGAAAT GTATGTGATT AATGGTTCTA TTGATGATCC TCAACCTAAA
AAAGAAAAAA GATATCATTT GGTTGTTTTA GCAAAGAACC GTACTGGCTA TAAGAATCTC
GTAAAGTTAA CAACAATTAG TCACTTAAAT GGGATGAGAG GTCGAGGAAT TTTTTCTAGA
CCTTGTATTG ATAAATTTCT TTTAAGTAAA TATAGCGAGG GTCTTATAAT TTCTACAGCT
TGTCTTGGCG GAGAGATCCC TCAGGCCATC TTAAAAGGAA GATTAGATGT GGCAGAGGAT
ATAGCTCTTT GGTATAAAAA TTTATTTGCA GATGATTTTT ATCTGGAAAT ACAAGATCAC
GGCTCTATTG AGGATAGAAT TGTTAACATT GAATTATTAA GAATTGGGAA GAAGCATCAA
ATAAAAGTTA TCGCTACCAA TGATGCTCAC TACTTATCAA ATATGGATGT TGAAGCACAT
GATGCTTTGC TTTGTGTATT AACGGGAAAA CTAATAAGCG ATGAAAAAAG ATTGAGATAT
ACCGGTACAG AATATATTAA AAGTGAAAAT GAAATGCTTG AACTTTTTAA GGATCACATT
GATGATGAAT CAATTAAAGA GGCAGTGAAC AATACAGTAG AAATTTCGCA AAAAATTGAA
GTTTTTGATT TGTTTGGTAA ATATAGAATG CCAAAATTCC CGCTTAACGA AGACACAGAT
TCATTTTCTC TACTAACGCA ATTATCTAAT GAAGGTCTTT TAAAAAGACT TAAAAAAAAT
ACTCTGACAG AAGTTGATGA GAATTATAAA AAAAGATTAT CTTCGGAATT GAAAATCATA
AAAGATATGG GTTTCCCAGA TTATTTTTTG GTTGTTTGGG ACTATATCAA ATTTGCTAGA
GATAACTCTA TCCCAGTAGG ACCAGGTAGA GGTTCTGCAG CAGGTTCGTT AGTAGCCTAT
GCTCTTCAAA TCACAAATAT AGATCCTGTT GAGCATGGAT TATTATTTGA GAGATTTTTA
AATCCTGCAA GAAAGTCTAT GCCAGATATT GATACTGACT TTTGTATTGA TAGGAGAAAT
GAAGTTATTG ATTATGTTAC TAATCGCTAT GGAGAGGATA AAGTTGCTCA AATAATTACT
TTTAATAAAA TGACTTCTAA GGCGGTTTTA AAAGATGTTG CAAGGGTTCT AGATATTCCT
TATGGAGAGG CAGATAAATT AGCTAAGTTA ATACCCGTTG TAAGAGGTAA ACCCCATAAA
CTTAATGAAA TGATTGATAA GAATTCACCT AGCCAAGAGT TTAGAGATAA ATATATTAAT
GACAATAGGG TAAAAAAATG GATTGATTTG GCTTTGAGAA TTGAAGGAAC TAATAAAACA
TATGGAGTCC ATGCTGCAGG AGTTGTTATT GCGTCAGATC CTCTTGACGA ACTTGTACCT
CTTCAAAGGA ATAATGAGGG ACAAATAATA ACCCAATATT CTATGGATGA TATTGAATCA
CTTGGACTAT TGAAAATGGA TTTCTTGGGT CTTAAGAATC TTACGATGAT TGAAAAGACA
GTTTCTCTGA TTAATCAATC CACTGGAAAG ACAATAAATA TTGATAACTT ACCCCAAAAT
GATGATAAAA CATTTGAGCT TATTGGTAGA GGAGATCTTG AAGGTATATT TCAACTTGAA
TCTTCTGGTA TGAAACAGGT TGTAAAGGAC TTTAAGCCTA ACTCACTTGA GGATATTTCA
TCTATCTTAG CTCTTTATAG ACCTGGTCCT CTTGATGCTG GCCTAATACC TAAATTCATA
AATCGAAAAA ATGGAAACGA AAAGGTTGAT TTCCCTCATC CTTTCATAAA GTCAATTCTT
ACCGAAACCT ATGGAATTAT GGTTTATCAA GAACAAATTA TGAAAATTGC TCAAGACTTA
GCCGGTTATT CTCTTGGTGA TGCTGATTTA CTTCGAAGAG CAATGGGAAA AAAGAAAGTA
TCAGAGATGG TTAAGCATAG GAATATATTT GTAGACGGCT CTATGAAAAA GGGCGTAAAT
GAAAAATTAG CGAATGATCT TTTTGATCAA ATGGTTTTAT TTGCAGAATA TTGTTTTAAC
AAAAGCCACT CAACTGCTTA TGGTGCAGTA ACTTATCAAA CTGCATTTTT AAAAGCCCAT
TTTCCTGTTG CATATATGGC AGCCCTTTTA AGTGTGAATT CTGGCTCCAG TGACAAGATG
CAAAGATATA TTTCTAATTG TTATTCGATG GGAATAGAAG TTATTTCACC AAGCATTAAT
TTCTCTGGAA TTGATTTCAC TATTAAAAAT AATCAGATTT TATTTGGTCT GTCTGCAATT
AAAAACTTAG GAGATTCTGC TATAAGAAAT ATAATTGAAA ATCGTAATAA TTCCGGAAGT
TTTAAGTCAC TATCCGATCT GTGTGATCGT TTACCTTCAA ATGTTCTTAA CAAAAGAAGT
ATTGAATCTC TAATTCTTTG TGGAGCACTT GATGAGTTTT CAAATAATAA TAATAGAGCT
CAATTATTGT CAGATCTAGA ACATGTCATT GAATGGGCCT CTTCACGAAA TCGTGATAGA
TTATCTGGCC AAGGAAATCT ATTTGACTCT AAAGAAGAAT TTTCAAATGT AGCATTTTCA
GATTCACAAT TAGCTAAGGT TGATGATTAT TCACTTATTG ATAAGTTAAA GCTTGAAAAG
CAGCTTTTAG GCTTTTACTT ATCTGATCAT CCGCTAAAAC ATTTAACTAA GCCAGCAAAA
CTTGTATCTC CAATTAGTGT TTCGCAGTTA GAAGAAACAA AAGATAGAAC CAAAGTCTCT
TTAGTTGGTA TGATCCCTGA GTTGAAGCAA ATCACTACGA GAAAAGGAGA TAGGATGGCT
ATAGTTCAGC TTGAAGATCT TTCTGGCAGT TGTGAAGCAA TAGTTTTTCC TAAAACCTAT
GTCAGATTAT CAGAATTTCT TTTGACTGAT ACTAGATTAT TAGTCTGGGG AACGATAGAT
AAAAAAAGTG ATAAAACTCA ATTAATAATC GATGATTGCA GAGAAATAGA TAACCTTAAA
TTACTTATTA TTAATCTTGA AAGTTCTCAA GCATCAGATG TAAGAGTACA AAATACGTTA
AGAGACTGTT TAATTAAATT TAAGCCAGAT AAAGGTAAAT GTGGAATTAA GATTCCAGTT
TTAGCTGCAG TAAGAAGTAA AAATAGCGTT ACCTACGTTA AATTTGGTGA ACAATTCTGT
ATTGGAGATA TCCAAGGTGC ATGCAAATTA TTGGAAAATA AATCATTCCA TGTTAATTTG
AAATCTTTAG TTTCCTAA
 
Protein sequence
MGFIPLHNHS DYSLLDGASQ ISKIVDRACE LGMDSIALTD HGVMYGVLDL VKKCKEKGIK 
PIIGNEMYVI NGSIDDPQPK KEKRYHLVVL AKNRTGYKNL VKLTTISHLN GMRGRGIFSR
PCIDKFLLSK YSEGLIISTA CLGGEIPQAI LKGRLDVAED IALWYKNLFA DDFYLEIQDH
GSIEDRIVNI ELLRIGKKHQ IKVIATNDAH YLSNMDVEAH DALLCVLTGK LISDEKRLRY
TGTEYIKSEN EMLELFKDHI DDESIKEAVN NTVEISQKIE VFDLFGKYRM PKFPLNEDTD
SFSLLTQLSN EGLLKRLKKN TLTEVDENYK KRLSSELKII KDMGFPDYFL VVWDYIKFAR
DNSIPVGPGR GSAAGSLVAY ALQITNIDPV EHGLLFERFL NPARKSMPDI DTDFCIDRRN
EVIDYVTNRY GEDKVAQIIT FNKMTSKAVL KDVARVLDIP YGEADKLAKL IPVVRGKPHK
LNEMIDKNSP SQEFRDKYIN DNRVKKWIDL ALRIEGTNKT YGVHAAGVVI ASDPLDELVP
LQRNNEGQII TQYSMDDIES LGLLKMDFLG LKNLTMIEKT VSLINQSTGK TINIDNLPQN
DDKTFELIGR GDLEGIFQLE SSGMKQVVKD FKPNSLEDIS SILALYRPGP LDAGLIPKFI
NRKNGNEKVD FPHPFIKSIL TETYGIMVYQ EQIMKIAQDL AGYSLGDADL LRRAMGKKKV
SEMVKHRNIF VDGSMKKGVN EKLANDLFDQ MVLFAEYCFN KSHSTAYGAV TYQTAFLKAH
FPVAYMAALL SVNSGSSDKM QRYISNCYSM GIEVISPSIN FSGIDFTIKN NQILFGLSAI
KNLGDSAIRN IIENRNNSGS FKSLSDLCDR LPSNVLNKRS IESLILCGAL DEFSNNNNRA
QLLSDLEHVI EWASSRNRDR LSGQGNLFDS KEEFSNVAFS DSQLAKVDDY SLIDKLKLEK
QLLGFYLSDH PLKHLTKPAK LVSPISVSQL EETKDRTKVS LVGMIPELKQ ITTRKGDRMA
IVQLEDLSGS CEAIVFPKTY VRLSEFLLTD TRLLVWGTID KKSDKTQLII DDCREIDNLK
LLIINLESSQ ASDVRVQNTL RDCLIKFKPD KGKCGIKIPV LAAVRSKNSV TYVKFGEQFC
IGDIQGACKL LENKSFHVNL KSLVS