Gene PMT9312_0568 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPMT9312_0568 
Symbol 
ID3765367 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameProchlorococcus marinus str. MIT 9312 
KingdomBacteria 
Replicon accessionNC_007577 
Strand
Start bp530371 
End bp531450 
Gene Length1080 bp 
Protein Length359 aa 
Translation table11 
GC content30% 
IMG OID637797088 
Productputative CaCA family sodium/calcium exchanger 
Protein accessionYP_397065 
Protein GI78778953 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG0530] Ca2+/Na+ antiporter 
TIGRFAM ID[TIGR00367] K+-dependent Na+/Ca+ exchanger related-protein
[TIGR00378] calcium/proton exchanger (cax) 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.74342 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGTGATT TTTTATTTCC AATAATAGAA ATATTTTTAG GAGTTGTTTT ACTTTTTGCA 
GGAGGAGAGT TCTTTATCCA AGGAGCTATA TATTTATCTT TGATTTTAGG AATACCTCAA
ATAGTTATTG GTTTAACAGT TGTTTCACTA GGTACAAGCT CTCCTGAATT ATTAGTCAGT
TTAAGTTCAA TTTTAAAAGG TAGTGATTCG ATTGCGGCTA GCAATGTAAT AGGAAGCAAT
ATCTTCAATG TTCTTGTAGT TTTAGGTATA AGCTCATTGA TAACACCACT TAAGGTAAAA
AGCAGGATAG TCAGAAGAGA TGTCCCTCTA TTAATGGCTA TTTCTTGTGC TGTTTGGGCA
ATGTCATCAA CAGGCTTATT AACATTGCAA GCAGGGATCT TTCTAATATT TTGTTTAGTC
TTAAATACAA TATGGGAAAT TAATACTATC AATGAGAAAG AAGAGGCTAC AAAAGATGCT
GAACCAGAGA TAGCTGAATT CAAAAATAAC CATAAAGGAA AGCTAAATAT TTTACTAAAG
TTAATATTGG GAATATTTCT TTTAAGCTTT GGTTCAAATA TTTTAGTAAA CGGTTCTCAA
ACTCTCGCTA CTCTTTTAGG TGTAAATGAA ATTGTTATTG GTTTAACTAT TGTCGCCACT
GGAACATCTT TGCCAGAATT AGTAACCTCA ATAATTGCAG CATTTAAAGG CAAAACAGAT
CTTGCGATTG GGAATGTAAT TGGAAGCAAT TTGCTCAATC AACTTCTAAT TCTTGGAAGT
TGTAGTATTT TTTCAGGATT TAAAGGTTTA GTAATTGAAC AAAGCCTAAT AAAAGTTGAC
TTACCTTTTA TGGTTTTAAC TACCTTTGCA TGCTTACCAA TTTTTTGGAG CAAAGGAAAA
ATTACGAGAA TTGAAGGATT TATTTTGCTT AATCTTTATA TTTTTTACAT TCTTGACAAG
ATACTCTTTT TGAATGAATT TAATTATCTT TCTGAATTAA GGATAGGTTT AATTTTTTAC
TTTTCATTAC TTGTAGTAAT TCTATTTGCT CAAGAAAATT TAAAATTTTC TGAATCATAA
 
Protein sequence
MSDFLFPIIE IFLGVVLLFA GGEFFIQGAI YLSLILGIPQ IVIGLTVVSL GTSSPELLVS 
LSSILKGSDS IAASNVIGSN IFNVLVVLGI SSLITPLKVK SRIVRRDVPL LMAISCAVWA
MSSTGLLTLQ AGIFLIFCLV LNTIWEINTI NEKEEATKDA EPEIAEFKNN HKGKLNILLK
LILGIFLLSF GSNILVNGSQ TLATLLGVNE IVIGLTIVAT GTSLPELVTS IIAAFKGKTD
LAIGNVIGSN LLNQLLILGS CSIFSGFKGL VIEQSLIKVD LPFMVLTTFA CLPIFWSKGK
ITRIEGFILL NLYIFYILDK ILFLNEFNYL SELRIGLIFY FSLLVVILFA QENLKFSES