Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PMT9312_0497 |
Symbol | |
ID | 3765296 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Prochlorococcus marinus str. MIT 9312 |
Kingdom | Bacteria |
Replicon accession | NC_007577 |
Strand | - |
Start bp | 464827 |
End bp | 466008 |
Gene Length | 1182 bp |
Protein Length | 393 aa |
Translation table | 11 |
GC content | 33% |
IMG OID | 637797017 |
Product | RNA polymerase sigma factor RpoD |
Protein accession | YP_396994 |
Protein GI | 78778882 |
COG category | [K] Transcription |
COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain [TIGR02937] RNA polymerase sigma factor, sigma-70 family [TIGR02997] RNA polymerase sigma factor, cyanobacterial RpoD-like family |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.508169 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTGTCCAG TAGCAGCAGA TTCAAAGAAT TCCAAGCCTA GCTCAAAAAA AAAGATTAAC AAAAAAATTA ATTCCAATTT AGAAACAGTG GTTGAAGAAA ATAGTAATAT CAATAGTGAA AATTTAAAGG AATCTTCTTA TTCAAACGAA AGCAGCTTAG AAAACAATAA TGAATTTAGT GATTCTGAAG ATGCAGATAA GGGCCTTGGG AACATAAAGC TTGGGCCAAA AGGTATATAC ACCGAAGATT CAATAAGAGT TTACCTGCAA GAAATTGGAA GAATTAGACT TTTAAGACCA GATGAAGAAA TTGAACTTGC AAGAAAAATT GCTGACTTAC TCCAATTAGA AGAACTGGCA ACTCAATATG AGTCAGAAAA AGGCCATTTC CCTTCTGTTA GAGAATGGGC AGAATTAATA GATATGCCTC TTTCCAAATT TAGAAGAAGA CTACTTTTAG GAAGAAGAGC TAAAGAAAAA ATGGTTCAAT CAAATTTAAG ATTAGTTGTT TCCATTGCTA AAAAATATAT GAATAGAGGT TTATCATTCC AAGATTTAAT ACAAGAAGGA AGTTTGGGTT TGATCAGGGC AGCAGAAAAA TTTGACCATG AAAAAGGTTA TAAATTCTCT ACTTATGCTA CTTGGTGGAT TCGCCAAGCC ATTACTAGAG CAATCGCAGA CCAAAGTAGG ACTATTAGAT TGCCAGTTCA TTTATACGAG ACAATATCCA GAATTAAAAA AACCACAAAA GTTCTCAGCC AAGAATTCGG AAGGAAACCC AGTGAAGAAG AAATAGCTGA GAGTATGGAA ATGACAATTG AAAAATTAAG ATTTATAGCT AAAAGTGCTC AGTTACCTAT TTCTTTAGAA ACTCCAATAG GCAAAGAAGA AGACTCAAGA CTTGGAGACT TTATAGAGGC TGATATAGAA AATCCAGAGC AAGATGTGTC TAAAACTTTA TTAAGAGAAG ATTTAGAGGG AGTCCTAGCA ACTCTAAGTC CAAGGGAAAG AGATGTTCTT AGATTGAGAT ACGGAATTGA TGATGGAAGA ATGAAAACTC TTGAAGAAAT TGGACAGATA TTTGATGTAA CTCGAGAAAG AATTAGACAA ATAGAAGCAA AAGCCCTAAG AAAACTTAGA CATCCAAATC GAAATGGGGT TTTAAAAGAA TATATAAAAT AA
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Protein sequence | MCPVAADSKN SKPSSKKKIN KKINSNLETV VEENSNINSE NLKESSYSNE SSLENNNEFS DSEDADKGLG NIKLGPKGIY TEDSIRVYLQ EIGRIRLLRP DEEIELARKI ADLLQLEELA TQYESEKGHF PSVREWAELI DMPLSKFRRR LLLGRRAKEK MVQSNLRLVV SIAKKYMNRG LSFQDLIQEG SLGLIRAAEK FDHEKGYKFS TYATWWIRQA ITRAIADQSR TIRLPVHLYE TISRIKKTTK VLSQEFGRKP SEEEIAESME MTIEKLRFIA KSAQLPISLE TPIGKEEDSR LGDFIEADIE NPEQDVSKTL LREDLEGVLA TLSPRERDVL RLRYGIDDGR MKTLEEIGQI FDVTRERIRQ IEAKALRKLR HPNRNGVLKE YIK
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