| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PMT9312_0454 |
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| Symbol | ispD |
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| ID | 3765251 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Prochlorococcus marinus str. MIT 9312 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007577 |
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| Strand | + |
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| Start bp | 429230 |
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| End bp | 429910 |
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| Gene Length | 681 bp |
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| Protein Length | 226 aa |
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| Translation table | 11 |
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| GC content | 33% |
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| IMG OID | 637796972 |
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| Product | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase |
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| Protein accession | YP_396951 |
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| Protein GI | 78778839 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1211] 4-diphosphocytidyl-2-methyl-D-erithritol synthase |
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| TIGRFAM ID | [TIGR00453] 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.312927 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | GTGCACTTTT TAATACCAGC TGCAGGCAGT GGTAGCAGAA TGAAAGCTGG GAAAAATAAA
TTACTTATTG ATTTAGAGGG AGAGTCTTTG ATTTATTGGA CACTTAAATC TGTATTTTCT
GCAAGCTCAA CAAACTGGGT TGGAATAATA GGGCAACCAA AAGATAAAGA ATTATTATTA
AATTCAGCAA AGAACTTTGC CCATAAAGTT CATTGGATTA ATGGTGGAGA TACCCGACAA
GAGTCAGTTT TTAATGGTTT AAAGGCACTG CCCAAAGATG CTGAAAAAGT TTTAATTCAT
GATGGTGCTC GATGTCTAAT TAATCCTGAA TTGATAGACC AATGCGCAAA CCAATTAGAT
CAAAATGAAG CTGTTATTTT GGCTACTAAG GTAACTGACA CAATAAAGAT TGTTGATAAT
GAAGGTTTTA TTAAAGAAAC ACCAGATAGA AATTACTTAT GGGCAGCGCA AACTCCTCAG
GGATTTTTAG TAGATAGATT AAAAAAAGCT CATACTATGG CAATTGATAA AAACTGGAAA
GTCACAGATG ATGCCTCACT ATTCGAAATG CTTAATTGGA AAGTAAAAAT CATTGAAGGA
ACTTATTCAA ATATAAAAAT TACGTCCCCT ATAGATTTGA AAATAGCAAA ACTTTTTGTG
AAGAACTCAA CTCCTAGTTA A
|
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| Protein sequence | MHFLIPAAGS GSRMKAGKNK LLIDLEGESL IYWTLKSVFS ASSTNWVGII GQPKDKELLL
NSAKNFAHKV HWINGGDTRQ ESVFNGLKAL PKDAEKVLIH DGARCLINPE LIDQCANQLD
QNEAVILATK VTDTIKIVDN EGFIKETPDR NYLWAAQTPQ GFLVDRLKKA HTMAIDKNWK
VTDDASLFEM LNWKVKIIEG TYSNIKITSP IDLKIAKLFV KNSTPS
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