Gene PMT9312_0405 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPMT9312_0405 
SymbolrpsD 
ID3765202 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameProchlorococcus marinus str. MIT 9312 
KingdomBacteria 
Replicon accessionNC_007577 
Strand
Start bp385850 
End bp386458 
Gene Length609 bp 
Protein Length202 aa 
Translation table11 
GC content38% 
IMG OID637796923 
Product30S ribosomal protein S4 
Protein accessionYP_396902 
Protein GI78778790 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0522] Ribosomal protein S4 and related proteins 
TIGRFAM ID[TIGR01017] ribosomal protein S4, bacterial/organelle type 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCAAGAT ACCGCGGCCC CAGGTTAAGG GTTACGCGTC GCTTGGGAGA ACTACCAGGT 
CTCACTAGGA AAGCTTCAAA GAAGTCTAAT CCTCCAGGTC AGCACGGCCA AGCCCGTCGC
AAGCGATCAG AATATGCAAT TCGTTTAGAA GAAAAGCAGA AACTCAGGTT TAATTATGGA
GTTTCTGAAA AACAACTAGT ACGTTATGTA AAAAAAGCCA GAGCGCAAGA AGGATCTACA
GGAACAAACC TACTAAGACT TTTAGAAAAC AGACTAGATA ATGTTTGTTT TAGATTAGGT
TTTGGAGGTA CTATTCCAGG CTCAAGACAA TTAGTAAATC ATGGCCATGT AACTGTTAAT
GGTAAAGTTC TTGATATTGC TGGTTATCAA TGCAAATCAG GCGATGTAAT CGGAATTAAA
GAAAACAAAG CAAGCAAAAA ACTTGTAGAA GGTAATATAG AATTCCCTGG TTTAGCAAAT
GTTCCTCCAC ATCTTGATTT AGACAAACCT AAATTAACAG GAAAAATAAC TGGAAAATGC
GATAGAGAGT GGGTTGCTCT TGAAATAAAC GAACTATTAG TTGTTGAATA TTATTCAAGA
AAAGTTTAA
 
Protein sequence
MSRYRGPRLR VTRRLGELPG LTRKASKKSN PPGQHGQARR KRSEYAIRLE EKQKLRFNYG 
VSEKQLVRYV KKARAQEGST GTNLLRLLEN RLDNVCFRLG FGGTIPGSRQ LVNHGHVTVN
GKVLDIAGYQ CKSGDVIGIK ENKASKKLVE GNIEFPGLAN VPPHLDLDKP KLTGKITGKC
DREWVALEIN ELLVVEYYSR KV