Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PMT9312_0405 |
Symbol | rpsD |
ID | 3765202 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Prochlorococcus marinus str. MIT 9312 |
Kingdom | Bacteria |
Replicon accession | NC_007577 |
Strand | - |
Start bp | 385850 |
End bp | 386458 |
Gene Length | 609 bp |
Protein Length | 202 aa |
Translation table | 11 |
GC content | 38% |
IMG OID | 637796923 |
Product | 30S ribosomal protein S4 |
Protein accession | YP_396902 |
Protein GI | 78778790 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0522] Ribosomal protein S4 and related proteins |
TIGRFAM ID | [TIGR01017] ribosomal protein S4, bacterial/organelle type |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGTCAAGAT ACCGCGGCCC CAGGTTAAGG GTTACGCGTC GCTTGGGAGA ACTACCAGGT CTCACTAGGA AAGCTTCAAA GAAGTCTAAT CCTCCAGGTC AGCACGGCCA AGCCCGTCGC AAGCGATCAG AATATGCAAT TCGTTTAGAA GAAAAGCAGA AACTCAGGTT TAATTATGGA GTTTCTGAAA AACAACTAGT ACGTTATGTA AAAAAAGCCA GAGCGCAAGA AGGATCTACA GGAACAAACC TACTAAGACT TTTAGAAAAC AGACTAGATA ATGTTTGTTT TAGATTAGGT TTTGGAGGTA CTATTCCAGG CTCAAGACAA TTAGTAAATC ATGGCCATGT AACTGTTAAT GGTAAAGTTC TTGATATTGC TGGTTATCAA TGCAAATCAG GCGATGTAAT CGGAATTAAA GAAAACAAAG CAAGCAAAAA ACTTGTAGAA GGTAATATAG AATTCCCTGG TTTAGCAAAT GTTCCTCCAC ATCTTGATTT AGACAAACCT AAATTAACAG GAAAAATAAC TGGAAAATGC GATAGAGAGT GGGTTGCTCT TGAAATAAAC GAACTATTAG TTGTTGAATA TTATTCAAGA AAAGTTTAA
|
Protein sequence | MSRYRGPRLR VTRRLGELPG LTRKASKKSN PPGQHGQARR KRSEYAIRLE EKQKLRFNYG VSEKQLVRYV KKARAQEGST GTNLLRLLEN RLDNVCFRLG FGGTIPGSRQ LVNHGHVTVN GKVLDIAGYQ CKSGDVIGIK ENKASKKLVE GNIEFPGLAN VPPHLDLDKP KLTGKITGKC DREWVALEIN ELLVVEYYSR KV
|
| |