Gene PMT9312_0202 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPMT9312_0202 
Symbol 
ID3764987 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameProchlorococcus marinus str. MIT 9312 
KingdomBacteria 
Replicon accessionNC_007577 
Strand- 
Start bp194846 
End bp195565 
Gene Length720 bp 
Protein Length239 aa 
Translation table11 
GC content31% 
IMG OID637796709 
ProductRNase HI 
Protein accessionYP_396700 
Protein GI78778588 
COG category[L] Replication, recombination and repair 
COG ID[COG0328] Ribonuclease HI 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAATAGCG ATTGTATTGC AATTGAAGCT GCAACTGATG GAGCCTGCAG CGGTAATCCA 
GGTCCAGGGG GTTGGGGTGG TTTAATAATT TTTGACGATA ACAGTGAATT AGAAATAGGT 
GGTTCCGAGC AAAATACCAC TAATAATAGA ATGGAATTAA CTGCAGCTAT AAAAACTCTT 
GAAAAATTAA CAACCTATAA ATTAAAAGAG AACTTTAAAT TAAGAACCGA TAGTAAATAT 
GTAATAGAAG GGTATACAAA ATGGATTATA AACTGGAAGA GAAATGGATG GAAAACAAGC 
GCAGGAAAAC CAGTACAGAA TCTTGATTTA TGGCAAAAAA TTGATCAATT AAGAATTAAT 
GGCCTAATAA TGGAATATGT TAAGGGTCAT AGCGGGGATA AACAAAATGA TAGGGTTGAT 
AAAATAGCAA CTAATTACAG CAAAGGTATA TCTATAGGAA GTAACTTAAA AGAAGCAGAA 
TCCTCAGTTG ACCTTTTTGA AAAAAATGCA CCTGCAGAAA TTCAGGCATT ATTTTCAAGA 
AATGAATTAA TTCAAAAATT TGCAGAAAAA AGTTACTTGT TAAGTTCATT AGAACTGAGT 
AACTTATTGG GCAAAGAAAA CCACTTAAAG ATAAAACAAT ATTTACTTTT TGAATGGCGT 
AATTGGAGAT TGATTCCTAA AGATAAAAAA TATTGGATAA TAGAAAAAAA AGAATCCTAA
 
Protein sequence
MNSDCIAIEA ATDGACSGNP GPGGWGGLII FDDNSELEIG GSEQNTTNNR MELTAAIKTL 
EKLTTYKLKE NFKLRTDSKY VIEGYTKWII NWKRNGWKTS AGKPVQNLDL WQKIDQLRIN 
GLIMEYVKGH SGDKQNDRVD KIATNYSKGI SIGSNLKEAE SSVDLFEKNA PAEIQALFSR 
NELIQKFAEK SYLLSSLELS NLLGKENHLK IKQYLLFEWR NWRLIPKDKK YWIIEKKES