| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Suden_2088 |
|---|
| Symbol | |
|---|
| ID | 3763099 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sulfurimonas denitrificans DSM 1251 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007575 |
|---|
| Strand | - |
|---|
| Start bp | 2180801 |
|---|
| End bp | 2182534 |
|---|
| Gene Length | 1734 bp |
|---|
| Protein Length | 577 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 30% |
|---|
| IMG OID | |
|---|
| Product | diguanylate cyclase/phosphodiesterase |
|---|
| Protein accession | YP_394597 |
|---|
| Protein GI | 78778282 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGTCAGACA AAACATATAA ACTTGTTGAT ATTTTAAATT TGCATCCCTC AAAAGTAGCA
GTTGAAGAAA GATTAAATCT AGCGCTTAAC TTTTTTGAAA GTACTAATGA GGGGATATTG
ATAGCAAATA GAGAAGGCTT GATAAAATTT GTAAATAGAG CCTTTTGCGA AATAACAGGT
TATACTCAAG AAGAAGCTAT TGGAAAAAAA CCAAATATTT TAAAATCTGG AATCCATGAT
ATAGCATTTT ATAAAAGTAT GCGAGAAAGT CTAGAAAAAA ATGGTTATTG GAAGGGTGAG
ATATGGGATA AAAGAAAAAA TGGCGAGATA TATCCGCAGA TTTTATCGAT ATCTAAAAAT
AAAAACTCCA AATTCAGTGA AAATTACTAC ATGTCGGTTT TTACTGATAT ATCAGATATT
AAAAAGAGCG AGAAAAAAGT TTACTATAAT GCTAACTACG ACTCTTTAAC CAAACTTCCA
AACAGAACTT ACTTCAATAA AGAACTTGAG GCTATACTAA AAGAAGCCGA TAAAGAAAAC
TATCAAGTTG CTCTTTATTT CATAGATATA GACAAGTTTA AAGAAGTAAA CGATACGCAT
GGACATAATG TTGGCGATAA GATGCTTATA AACGTATCAA AAAGACTTTT AAACAGCATA
AGAGAGAATG ATGTTATAGC TAGAATAGGT GGAGACGAGT TTGTTTTAAT AGCTAAAAAT
ATAAAAAGTG AAGAAAATGT CAAACAGCTC GCATCTAATC TTAAAAAAAA GATTAAAGAA
CCAATGGAGG TAGATAATCA AATCTTTCAT GTTGGTCTAT CTATCGGTGT TGCTATATAT
CCGCAACACG GCATCTCGAG TGAAGAGTTA TTGAAAAATG CCGACATTGC TATGTATGAA
GTTAAAAAAA GCACAAGAGA CGGCTTTAAA ATATATGATA AATTGATGTC AACTAAAATT
GCAATGGCTA TATCCATCCA AAAGGATATA AGAAAAGCAT TGGAAGAGGA TATGTTTATT
GTTTATTATC AACCTGTTAT AGATATGCAC ACAAACTCCA TAATAGGTGC AGAAGCACTT
GTAAGATGGA ATCATCCACA AAAAGGGATA CTAGAGCCTG AGAGTTTTTT ACAATATGTT
TTATCAGGAG ATGTAGGAAG AGAGTTTGGT TGCATGGTTT TTTCAGAGAT TTTAACAGAT
TTGAAGCACA TAAATGAAAC ATTGCCAAAA AGTAAGCTGC AAATATCTGT AAATATATCA
AAATATCAGC TATCAAACTC GACTTTTTGC TTCGATTTTT TAAATATATT TGAAAGAAAT
TTTATTAATG CAGATCAGTT AGAGTTAGAG ATAATAGAAA CCGAGATTAT GCAAAACAGA
GAAATGATAA AAAAAAATGT GGAAGAACTC TCTTTATGCG GATTTAATAT AGCTTTTGAC
AATTTTGGAA CAGGCTATTC AAGCCTCAGT TATTTGCGTG ATATAAAAGT AGATAAACTA
AAAATAGACA AATCATTTGT AAAAAACATG CTAGAAAATG AGAAAGATTT AAATATAGTA
AAATCAATAA TAGATATAGG GAAACTTTTT GATTTAAAAG TTCAAGCTCA GGGTGTAGAA
ACTAAAGAGC AGTATATAAA ATTAAAAGAG ATAGGTTGTC ATTTCTCACA AGGTTTTTAC
CATTCACAAC CACTTTGTGT TGATGACTTT ATGGGTTATT ATAATAAAAT TTGA
|
|---|
| Protein sequence | MSDKTYKLVD ILNLHPSKVA VEERLNLALN FFESTNEGIL IANREGLIKF VNRAFCEITG
YTQEEAIGKK PNILKSGIHD IAFYKSMRES LEKNGYWKGE IWDKRKNGEI YPQILSISKN
KNSKFSENYY MSVFTDISDI KKSEKKVYYN ANYDSLTKLP NRTYFNKELE AILKEADKEN
YQVALYFIDI DKFKEVNDTH GHNVGDKMLI NVSKRLLNSI RENDVIARIG GDEFVLIAKN
IKSEENVKQL ASNLKKKIKE PMEVDNQIFH VGLSIGVAIY PQHGISSEEL LKNADIAMYE
VKKSTRDGFK IYDKLMSTKI AMAISIQKDI RKALEEDMFI VYYQPVIDMH TNSIIGAEAL
VRWNHPQKGI LEPESFLQYV LSGDVGREFG CMVFSEILTD LKHINETLPK SKLQISVNIS
KYQLSNSTFC FDFLNIFERN FINADQLELE IIETEIMQNR EMIKKNVEEL SLCGFNIAFD
NFGTGYSSLS YLRDIKVDKL KIDKSFVKNM LENEKDLNIV KSIIDIGKLF DLKVQAQGVE
TKEQYIKLKE IGCHFSQGFY HSQPLCVDDF MGYYNKI
|
|---|
| |