| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Suden_1923 |
|---|
| Symbol | |
|---|
| ID | 3763044 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sulfurimonas denitrificans DSM 1251 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007575 |
|---|
| Strand | - |
|---|
| Start bp | 2004614 |
|---|
| End bp | 2006494 |
|---|
| Gene Length | 1881 bp |
|---|
| Protein Length | 626 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | |
|---|
| Product | tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA |
|---|
| Protein accession | YP_394432 |
|---|
| Protein GI | 78778117 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.206759 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATTATG ATGTAATTAT TATCGGTGGC GGTCATGCGG GGGTTGAGGC TTCTTTGGCA
TCTGCTAGAA TGGGAAATAA AACTCTGCTT ATCTCAATGC TCGCTGAAAA TGTTGGAGCT
ACAAGCTGTA ACCCAGCAAT CGGAGGTTTA GCAAAAGGTC ATTTAGTACG AGAGATAGAT
GCTCTAGGCG GAGAGATGGC TTTAATAACA GATGAAGCAG GGATACAGTT TCGCATACTA
AACCAGACAA AAGGTCCAGC AGTTCGTGGA AGTCGTGCCC AAATTGATAT GGATAGATAC
CGAGTAATCG CTAGAAATAA GATTTTAAAC ACTCCAAACC TAGAGCTAGT TCAAGAGATG
GCAGAATCAC TTATTATCGA AGATGGTGAA GTAAAAGGTG TTAAAACAAA TCTTTTAAAT
GAGTACAGCG CCAAGAGAGT GATAGTTACA AGTGGTACAT TTTTAAGAGG CGTTATACAT
GTAGGCGAGA TAAAACAAAT TGGCGGGCGA TATGGTGAAC AGAGCAGCGA TGCTCTAAGC
GCCTCACTAA AATCTTGTGG TTTAGAGATG GGAAGATTAA AAACAGGTAC ATGTGCTAGA
GTTGATGCTT CAACTATAGA CTTTTCTGTA ATGGAAGAGC AAGGCGGTGA TGAGCTTCCA
AATCCATTTA GTTTTAGAAC AAATCGTGAA GAGTTTAGAA AAACCAAAAA GCAGATTCCT
TGCTACATCA CCTATACAAA TCAAAATACA CATGACATTA TAGAGAGCAA CTTCTACAGA
GCACCAATGT TTACAGGTCA AATTGAGGGA CGTGGACCAC GCTACTGCCC AAGCATAGAA
GATAAAATAA ACCGCTTTAG AGACAAAGAG AGACATCATC TCTTTATAGA ACCTCAAACT
CTTGAAAATA CAGAATGCTA CATAAATGGT ATGAGCACTT CACTTCCACC AGATGTTCAA
CAGCTGATGA TTAACTCTGT AAAAGGGATG GAAAATGCAA AAATAGTCCG TTATGGGTAC
GCCATAGAGT ACGATTTTGT AGATCCAAGA GAGTTGAAAC ACACGCTAGA GACAAAAAAG
ATAAAAGGTC TTTATCTAGC AGGGCAGATT AACGGTACAA CAGGTTATGA GGAAGCTGCT
GCGCAAGGTT TAATGGCTGG CATAAATGCT TCACTTAGCC TCCAAGGCAA AGAGCCTTTT
ATTTTACGCC GTGATGAGGC TTATATAGGC GTTTTGATAG ATGATTTAGT AACAAAAGGG
ACAAAAGAGC CATATAGAAT GTTTACATCC CGTGCAGAGT ACAGACTTCT TCTGCGTGAA
GAGTCAGCAG ATACAAGGCT TAGTCATTAT GGACATACAT TTGGGCTCAT AGATGATGAG
AATTATGAGA GAGTAAAAGC AAAAGAGGCA CAGATTCAAG AGGGTGCGAG GATTTTAAGA
GAGACAATTT TTACACCAAA TAAGGAGTTT ATAGCATTTT TGAACTCTAT TGGCGAAGAG
GGTGTAAGAG ATACTATCTC GGCTGAACAG ATAGTGGCAA GAAAAAGTTT TGATGTGTCA
AAAATGTTAA AGCTAATTCC AGAGTTTGAG ATGTATGAGT CATATATACT AGATGAAATT
TTAGTAGAGG GGAAATATGC CCGCTATGTC CAAAAACAGA GCGAAGAGAT ACAGAAGATG
AAAAAGTATC TAAAAGTAGA AATTCCTCAA AATTTTGCCT TTAGAAGCAT TAGCGGATTA
AGCAAAGAGA TAGTAGAAAA GTTGGAATCT TTCAACCCGC CAACACTACA AGCAGCTTCA
CAAATCAGCG GAATAACCCC AGCTGCTATA GAGATTTTAC ATATATATAT AAAAATAGAT
ATAAAAAACA GAAATAAATA A
|
|---|
| Protein sequence | MNYDVIIIGG GHAGVEASLA SARMGNKTLL ISMLAENVGA TSCNPAIGGL AKGHLVREID
ALGGEMALIT DEAGIQFRIL NQTKGPAVRG SRAQIDMDRY RVIARNKILN TPNLELVQEM
AESLIIEDGE VKGVKTNLLN EYSAKRVIVT SGTFLRGVIH VGEIKQIGGR YGEQSSDALS
ASLKSCGLEM GRLKTGTCAR VDASTIDFSV MEEQGGDELP NPFSFRTNRE EFRKTKKQIP
CYITYTNQNT HDIIESNFYR APMFTGQIEG RGPRYCPSIE DKINRFRDKE RHHLFIEPQT
LENTECYING MSTSLPPDVQ QLMINSVKGM ENAKIVRYGY AIEYDFVDPR ELKHTLETKK
IKGLYLAGQI NGTTGYEEAA AQGLMAGINA SLSLQGKEPF ILRRDEAYIG VLIDDLVTKG
TKEPYRMFTS RAEYRLLLRE ESADTRLSHY GHTFGLIDDE NYERVKAKEA QIQEGARILR
ETIFTPNKEF IAFLNSIGEE GVRDTISAEQ IVARKSFDVS KMLKLIPEFE MYESYILDEI
LVEGKYARYV QKQSEEIQKM KKYLKVEIPQ NFAFRSISGL SKEIVEKLES FNPPTLQAAS
QISGITPAAI EILHIYIKID IKNRNK
|
|---|
| |