| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Suden_0353 |
|---|
| Symbol | rpoB |
|---|
| ID | 3764734 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sulfurimonas denitrificans DSM 1251 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007575 |
|---|
| Strand | + |
|---|
| Start bp | 348090 |
|---|
| End bp | 352235 |
|---|
| Gene Length | 4146 bp |
|---|
| Protein Length | 1381 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 36% |
|---|
| IMG OID | |
|---|
| Product | DNA-directed RNA polymerase subunit beta |
|---|
| Protein accession | YP_392869 |
|---|
| Protein GI | 78776554 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTAAATA CTTTATATTC CGGAAATCGT CTTCGTGTAG ACTTCTCTAA AACCCCTCAA
CAAATAGAAG TACCAAATTT ATTACAACTA CAACAAAGCT CATATAACAA GTTTTTAATG
CTTGAGGAAA AAGATAGATC ACAAAGTGGT GTTGAAACAG TTTTTCAATC AGTTTTTCCA
ATTCATGATA CTCAAAATAG ATTGACTGTT GAGTATATTG ATAGTGAAGT TGGAAAACCA
AAATACACAG TTAGAGAGTG TATGGAGCGT GGACTCACTT ATGCAGTTAG CTTAAGAATG
AAAACGCGTC TTATTCTTTG GGATAGAGAT GAAAATACAA AAGAGAAATT AGGTGTAAAA
GATATCAAAG AGCAGAGTAT ATTTGTTCGT GATATTCCAC TTATGACAGA GAGAACTTCA
TTTATTATCA ATGGTGTTGA GAGAGTTGTT GTAAATCAGC TTCACCGCTC TCCAGGTGTT
ATCTTTAAAG AAGAGGAATC AACTACTTCA GGCAATAAAC TAATATATAC TGGACAGATT
ATTCCAGATC GTGGTTCATG GCTCTATTTT GAGTATGATC CAAAAGATAT TCTTTATATG
AGAATAAATA AGCGTCGTAA AGTACCAGTT ACAATCATGT TCCGTGCTCT TGGGTACTCT
AAACAAGATA TCTTAAAACT TTTTTACCCA ATTCAACATA TTAACATCGT TGATAACAAA
TTTTTAATGT CATTTAATCC AAATGATTAC TCTAGCAGAT TAACTTATGA CTTAGTTGAC
AAAAATGGAA AAATTCTTTT AGCTTCAGGA AAAAGACTCT CCGCTAAAAA AGCACAAAAT
TTTATTGATG AGGGTTTAAG TGAAGTTGAG TATCCATTAG AAGTTCTTTT AGATAGATAC
TTGGCAAAGC CAATAGTTGA CCCTGAAACA GGCGAAATTC TCTTTGATGC TATGACAAGA
ATTGATGAAA CAAAACTTAA AAAACTGAGT GAAATTGGTG TTAAAAACTT CAGTATTGCG
AACGATTTGG CTGAAGGTGT GGATGGTTCA ATTATAAATG CGTTTAATGC TGATGCAGAT
TCTCTAAAGT TACTAAAGCA GACTGAAGAT ATAGAAGATG AAAACCATCT CTCAGCGATT
CGTATATATA AAGTAATGAG ACCAGGTGAG CCAGTAACAA AAGAGGCTGC AAAAGTTTTT
GTAAATCAAC TTTTCTTTGA TCCAGAGAGA TATGATTTGA CAAAAGTCGG TCGTATGAAG
ATGAATCATA AGTTGGGGCT AAATATTCCT GAATATATAA CTGTTTTAAC TCATGAAGAT
ATTATAGAGT CTGTAAAATA TGTTATCAAA GTTAAAAATG GACAAGGACA TATTGATGAT
AGAGATCACT TAGGTAATCG TCGTATTCGT TCAATAGGTG AACTTTTAGG AAATGAGTTA
CATAACGGTT TGATTAAGAT GCAAAAAGCG ATTCGTGATA AGCTCTCTAC AATGAGTGGA
CCTATGAATG AGCTAATGCC TCATGATTTG ATAAACTCAA AAATGATTAC TTCAACAATC
ATGGAGTTTT TCTCAGGCGG GCAGCTATCA CAATTTATGG ATCAAACAAA TCCTCTCTCG
GAAGTAACAC ATAAGCGTCG TTTATCAGCT CTTGGAGAGG GTGGACTTGT AAAAGAGCGT
GCTGGATTTG AAGTACGTGA CGTTCATCCA ACTCACTATG GTAGAATTTG TCCGATTGAG
ACTCCAGAGG GTCAAAATAT TGGTCTTATC AATACGCTTG CAACTTACTC AAAAGTTAAT
GAGCATGGAT TTATTGAAGC TCCATATAAA GTAATGAAAG AGGGAAAAGT AACAGATGAG
ATTGTTTATT TAACAGCTAC TCAAGAAGAG GGCAAGAAAA TTGCTGCTGC TTCAAATAAG
CTAGATAAAG ATGGTCAATT TATAGATAAA ATGGTTGTAA CTAGAGTTGA TGGAGAGATT
CTTCACCGTC CTGTTACCGA GTGTAACTAT GCTGACTTGT CATCTCACAT GGTTGTCGGT
GTTGCCGCTT CACTAATTCC ATTCTTAGAA CACGATGATG CAAACCGTGC TCTAATGGGT
GCAAACATGC AACGTCAAGC CGTTCCTCTT ATTAAACATG AAGCGCCTAT TGTTGGAACT
GGCGTTGAAA AACTTGTTGC TCGTGACTCT TGGGAATGCG TAAAGGCAAG ACGTTCTGGT
ATTGTAGAAA AAGTAGATGG AAAACATATC TATGTTATGG GAGATGATGA TGGAGAAATC
TATATAGATT ACTATCCATT GCAAAAAAAC CTTCGTACTA ACCAAAATAC AGCATTTGGT
CAAAAACCAA TTGTAAATAT TGGACAAAGA GTTGAAATTG GTCAAGTAAT CGCCGATGGT
CCAAATATGG ATCAAGGTGA ACTTGCTCTT GGTGTTAATG CAATGGTTGC GTTTATGCCT
TGGAATGGAT ACAACTTTGA GGATGCTATT GTAATCTCTG AGAGACTTAT TCGTAAAGAT
GCTTTTACAT CTGTTCATAT CTATGAAAAA GAGGTTGAAG CAAGAGAGCT AAAACATGGG
GTAGAAGAGA TTACTCGTGA TATTCCAAAT GTTAGAGATG ATGAACTCTC TCACCTAGAC
GAGAGCGGTA TTATCAAAAT TGGTACGAAT GTAACTGGTG GAATGATACT AGTCGGTAAA
GTTTCCCCAA AAGGTGAAGT AAAACCAACT CCAGAAGAGA GACTTCTTCG TGCAATTTTT
GGTGAAAAAG CGGGACATGT AATAAACAAA TCTCTTTATT GTCCTCCATC TATGGAAGGT
GTTGTTGTTG ATGTTAAAAT CTTTACAAAA AAAGGTTATG ACAAAGATGC ACGTACTCTT
GAACTTGAAA AAGAGGAGCG TGACTATTTA GAGCGTGAGC ACTATGATAG ACTTCTTATG
ATTGATAAAG AGGAGATGTT AAGAGTTACA AAACTTCTTA CAAAAGAGCC ACTTATAAAC
GATATTAAAA TTGGCAACAC AAGTTATAAA GCTGGCGATA TAATCAATGG CGAAGATTTA
GTTGAAGTGA ATCGTTTTGC AATGAATGCC ATAATTAAAT CATTCAGTGA AGAGATTCAA
TCAGAATATA ATAAAACTAA AAACTATTTC CAAAAAGAGA AAAGACTCTT CCGTGATGAG
CATGAAGAGA AGTTAAATAT CCTAGAAAAA GATGACATTC TTCCAAATGG CGTTGTTAAA
CATGTAAAGA TATATATTGC AACAAAGCGT CAACTAAAAG TTGGTGATAA AATGGCAGGA
CGTCATGGAA ATAAGGGTAT TGTCTCTACA ATAGTACCTG AAGTTGACAT GCCTTACATG
GAAGATGGAA GAGGCGTTGA TGTTTGTCTA AATCCTCTTG GTGTTCCATC TCGTATGAAT
ATCGGGCAAA TATTAGAGAT GCACCTTGGT ATGGCTGGAC GTGAGTTAGG GCATCAAATA
ACTAAAGAGT TTGAATCAAA GCAAAAAGAT TTTATTAAAA ATCTTCGAGC TAAAATGATT
GAAATAGCTG ATGTTGCTCA GATGATGAAT GCAGCTAAAA CTCTTGGAGA TATGAGTGAT
GAGTTGCTTC TGCACCATGC TCGTGACTGG TCAAGAGGTG TTAAGTTTGC ATCGCCTATA
TTTGAGGGTG TAAATGCTGT AGAGTTTGAA AAACTTTTTG CCCTTGCAAA AATGGACACA
GATGGTAAAA CAGTTCTTTA TAACGGTTTG ACTGGTGAGA AGATTAAAGA GCGTGTAAAC
GTTGGTTACA TGTACATCCT TAAGCTACAT CACTTAGTTG ATGAGAAGAT TCATGCTCGT
TCAACTGGAC CATACTCACT TGTTACTCAA CAACCAGTTG GTGGTAAAGC ACTATTTGGT
GGACAGAGAT TTGGAGAGAT GGAAGTTTGG GCACTAGAAG CTTATGGGGC TTCAGCAGTT
TTAAAAGAGA TGTTAACTAT CAAATCAGAT GATGTTGATG GTCGTGTTCG TGCATATAAA
GCTATTACAA AAGGTGAATT AGTTCCAGAA TCTGGGATTC CTGAGACACT ATTCGTATTG
ACAAAAGAGT TGCAATCACT TGCTCTTGAT GTAGAAATAT TTGACGAGGT AGAAGATAAT
GAGTAA
|
|---|
| Protein sequence | MLNTLYSGNR LRVDFSKTPQ QIEVPNLLQL QQSSYNKFLM LEEKDRSQSG VETVFQSVFP
IHDTQNRLTV EYIDSEVGKP KYTVRECMER GLTYAVSLRM KTRLILWDRD ENTKEKLGVK
DIKEQSIFVR DIPLMTERTS FIINGVERVV VNQLHRSPGV IFKEEESTTS GNKLIYTGQI
IPDRGSWLYF EYDPKDILYM RINKRRKVPV TIMFRALGYS KQDILKLFYP IQHINIVDNK
FLMSFNPNDY SSRLTYDLVD KNGKILLASG KRLSAKKAQN FIDEGLSEVE YPLEVLLDRY
LAKPIVDPET GEILFDAMTR IDETKLKKLS EIGVKNFSIA NDLAEGVDGS IINAFNADAD
SLKLLKQTED IEDENHLSAI RIYKVMRPGE PVTKEAAKVF VNQLFFDPER YDLTKVGRMK
MNHKLGLNIP EYITVLTHED IIESVKYVIK VKNGQGHIDD RDHLGNRRIR SIGELLGNEL
HNGLIKMQKA IRDKLSTMSG PMNELMPHDL INSKMITSTI MEFFSGGQLS QFMDQTNPLS
EVTHKRRLSA LGEGGLVKER AGFEVRDVHP THYGRICPIE TPEGQNIGLI NTLATYSKVN
EHGFIEAPYK VMKEGKVTDE IVYLTATQEE GKKIAAASNK LDKDGQFIDK MVVTRVDGEI
LHRPVTECNY ADLSSHMVVG VAASLIPFLE HDDANRALMG ANMQRQAVPL IKHEAPIVGT
GVEKLVARDS WECVKARRSG IVEKVDGKHI YVMGDDDGEI YIDYYPLQKN LRTNQNTAFG
QKPIVNIGQR VEIGQVIADG PNMDQGELAL GVNAMVAFMP WNGYNFEDAI VISERLIRKD
AFTSVHIYEK EVEARELKHG VEEITRDIPN VRDDELSHLD ESGIIKIGTN VTGGMILVGK
VSPKGEVKPT PEERLLRAIF GEKAGHVINK SLYCPPSMEG VVVDVKIFTK KGYDKDARTL
ELEKEERDYL EREHYDRLLM IDKEEMLRVT KLLTKEPLIN DIKIGNTSYK AGDIINGEDL
VEVNRFAMNA IIKSFSEEIQ SEYNKTKNYF QKEKRLFRDE HEEKLNILEK DDILPNGVVK
HVKIYIATKR QLKVGDKMAG RHGNKGIVST IVPEVDMPYM EDGRGVDVCL NPLGVPSRMN
IGQILEMHLG MAGRELGHQI TKEFESKQKD FIKNLRAKMI EIADVAQMMN AAKTLGDMSD
ELLLHHARDW SRGVKFASPI FEGVNAVEFE KLFALAKMDT DGKTVLYNGL TGEKIKERVN
VGYMYILKLH HLVDEKIHAR STGPYSLVTQ QPVGGKALFG GQRFGEMEVW ALEAYGASAV
LKEMLTIKSD DVDGRVRAYK AITKGELVPE SGIPETLFVL TKELQSLALD VEIFDEVEDN
E
|
|---|
| |