| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tcr_2190 |
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| Symbol | |
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| ID | 3761881 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thiomicrospira crunogena XCL-2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007520 |
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| Strand | - |
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| Start bp | 2414735 |
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| End bp | 2417626 |
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| Gene Length | 2892 bp |
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| Protein Length | 963 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 637786939 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_392452 |
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| Protein GI | 78486527 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG2524] Predicted transcriptional regulator, contains C-terminal CBS domains
[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACGATCA TGAAACATCA CCCCGACCCG GAAACTCGAA CGACCCAAGG ACAACAACCT
CTTGTGGTTT CGCAATTCAT GCATATCGGG TTAGAAACCT GTACGCCAGA TACCTGTATT
AAAGACGTTA TCGGGCGACT AAGTGAAAAA AACATCGGGT CGATTCTAAT TGAAGAATCG
GGCGAAATTG TCGGCATCTG GACACGAACG GATCTGTTAA AACTCGATTT TTCCTTACCG
GATATTTTAA AAGCGCCGAT TCGATCGGTG ATGAACTCGC CTGTTTGTCG AATCCATAAA
GACGAACTCA TTTCTTCTGC AACCTATTTA TTTCATAAAA AACAGTTTCA CCATTTACTG
GTCGTCGATT GTGATGAAGT TCCGGTCGGG GTTCTGGCCG AGTCGGATCT GGTTCAGGCA
CAAAGTTGCG AATCGTTTTT AGATGGCATT TCCATTCAAG AGTTATTGGC AGGACATTTA
TATTTTATTC AGGCCGATAG AGGGCTGGAT GACGTGCTGT CAATGATGTC GAAACATAAG
GTGGATGCGC TGGTCGTTGA AGACGTAGAT CAGTTGGGCA TTGTATCAAT GCGTGACTTG
TTTAAATGTT TCGCACAGCA AACGGATTAC AACACCCTTA AGGTGAAAGA CATCGCGTCC
TGGCCATTGA TCTCAGTACT GCAATCTCAA AGCCTATCCT ATGTCCGCCA ATTCATGATT
CAGCATAAAT TTCACCACAT TGGGGTGGAA GATGAAAACG GTAAATTACT TGATTTAATC
AGTTTTTCCG AGCTACTGCA TCGAATTGAA GAAAACTTTT ATTACCAAGC CAGTCTCAGT
ATCAAGGAAA AAGAACAGCG CATATTAGAA GCCGAAACGC TTTATCGCGA TTTATTGAGT
ATGTCGCTGA ATGGGATCAT TATTTATCAG GACGATGAGA TCGCTTTTGC TAATCATGCT
GTTCATCAAT TATTAGGTTA TGAAGACAAT GCGTTGTTGG GAAGTTGTCT TTTAAAGCTC
ATTCCTGACA TTCAGCAGAG CCGTTTCCTG AAACGTCTGC AGCAAATTGA CCAACATCAT
CCTGACTTTA TTGAACAGAC TATTTTATGT CAAGACGGTT CTGAGGTTAT GGTGGAAATG
ACCCATAAAC CCATTACCTA TCATGCTGAA CCTGCGCACC TGATTGTGGT GAACGATTTG
AGCTTTCGTC AAGAAAGCGA ACGTTTTCAG ATGTTGACAC GCTCTGTTTT TGATAATGCT
GGTGAAGGAA TTCTGGTCAC CGATATTCAC AATCGTTTTG TGGTGGTGAA TAAGAAATTT
GAAGAAATCA CCGGTTACAG TCAAGAAGAA GTGTTAGGAA AAAACCCTTC CATTTTGAGC
TCGGGGCAAC AATCAACGCT GTTTTATCAG GCCATGTGGC AGGAGTTAAG TGAAAAGGAT
ACTTGGCAGG GCGAAATTTG GAACCGAAAG AAAGATGGCA CCATGTATCC GGAATGGCTC
ACAATCAATG CCGTTAAGGA TAAACAAGGT CGATTGCTAC ACTATGTTGG CTTGATGAAT
GATTTGAGTC AACAAAAAGC CACCGAGCAG GAAATCACAC GGCTGTCCTT TTATGATATT
TTGACAGGGC TTCCTAATAT TTCGTTGTTT AAAAATCGTT TGCAGCAATC GATTCAAATG
TCGGTGCATG AGGCCAATCA AGTGGCCTTG CTGATTGTTG ATATTGCCCG TTTTAAAATG
ATTAACGATG CCATCGGCTA TGAGCATGGA GACCAGCTGT TAAAAGGGGT GGCTCAACGT
TTAACCCAGT TATTGGATGC GGAAGATTCG GTGGCTCGAC TGGGCGCAGA TAACTTCTTG
ATTTTAATGG AATCCTTTCA AAATAAGCAG GATGTATCGC ATTTTGCTGA AGAAATTATG
AACGCCTTTT CGTTACCTTT CGAAGTGGAA GGGCATGAAC ATGTGCTGGA TATCAAAATC
GGTGTCGCAC TTTCTTCGAT TGATGGGGAC ACGGCGTTGG ATTTAATGAA GTCTGCGGAC
GAAGCTCTGT TCGAAGCGAA AAAGTTACCT CATAGTGGCT ATGTTTACCA CTCCTCCGAA
TTAGCCGCCA CCACATCAGA ATACTTTTTT TATGAAAAGG CATTACGCCA GGCGATTGAT
AATCAAGAGC TGGTGGCTTA TTACCAGCCA CAAATCGTGC TTGAGACCAA CCAAGTGGTG
GGAGCGGAAG CATTGGTGCG TTGGATTCAT CCTGAGATGG GGGTGATCTC GCCAGCTAAG
TTTATCGGTA TTGCCGAATC GACGGGGTTG ATTATCCCGT TGGGTCGAGA AATTTTATTG
CAGGCCTGCC AGCAATGGCT AGCCTGGCAA CAACAAGGAT TGACGCTGGA GCGTATTTCC
GTAAATGTGT CGACAGTGCA ACTGATGCAC AGTGGCTTTG TCCAGTCGGT TGCGCAAGTA
CTGGAAGAAA CAGGACTCGA CCCAAAACAC CTTGAACTGG AAGTGACCGA GAGCTTTTTA
CTGCAGAATG AGCAAGAAGG GATCGCCGTT TTACATGCTC TAAAAGCCTT AGGGCTTTCC
TTGTCGATGG ACGACTTTGG AACAGGCTTC TCTTCGTTGT CTTATTTAAA GAAACTGCCG
CTGGATCAAC TGAAAATTGA CCAGTCTTTC ATCCGCTCCT TACCGCATGA TAAAGAAGAT
TTAGCGATTG TTGACGCGAT TATCGCTGTT GGCCTGGCCG TCGGTGTTGA AGTCATTGCA
GAAGGTGTGG AGACCGAAGC GCAGATGGAA TATCTGCATA AAAAAGGCTG TCAGCTAGGT
CAAGGTTATG GGTTTAGCCG ACCTATTCAG CAGCAAGAGT TTTTACAATG GTGCCAAACC
TTCCACTCAT AG
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| Protein sequence | MTIMKHHPDP ETRTTQGQQP LVVSQFMHIG LETCTPDTCI KDVIGRLSEK NIGSILIEES
GEIVGIWTRT DLLKLDFSLP DILKAPIRSV MNSPVCRIHK DELISSATYL FHKKQFHHLL
VVDCDEVPVG VLAESDLVQA QSCESFLDGI SIQELLAGHL YFIQADRGLD DVLSMMSKHK
VDALVVEDVD QLGIVSMRDL FKCFAQQTDY NTLKVKDIAS WPLISVLQSQ SLSYVRQFMI
QHKFHHIGVE DENGKLLDLI SFSELLHRIE ENFYYQASLS IKEKEQRILE AETLYRDLLS
MSLNGIIIYQ DDEIAFANHA VHQLLGYEDN ALLGSCLLKL IPDIQQSRFL KRLQQIDQHH
PDFIEQTILC QDGSEVMVEM THKPITYHAE PAHLIVVNDL SFRQESERFQ MLTRSVFDNA
GEGILVTDIH NRFVVVNKKF EEITGYSQEE VLGKNPSILS SGQQSTLFYQ AMWQELSEKD
TWQGEIWNRK KDGTMYPEWL TINAVKDKQG RLLHYVGLMN DLSQQKATEQ EITRLSFYDI
LTGLPNISLF KNRLQQSIQM SVHEANQVAL LIVDIARFKM INDAIGYEHG DQLLKGVAQR
LTQLLDAEDS VARLGADNFL ILMESFQNKQ DVSHFAEEIM NAFSLPFEVE GHEHVLDIKI
GVALSSIDGD TALDLMKSAD EALFEAKKLP HSGYVYHSSE LAATTSEYFF YEKALRQAID
NQELVAYYQP QIVLETNQVV GAEALVRWIH PEMGVISPAK FIGIAESTGL IIPLGREILL
QACQQWLAWQ QQGLTLERIS VNVSTVQLMH SGFVQSVAQV LEETGLDPKH LELEVTESFL
LQNEQEGIAV LHALKALGLS LSMDDFGTGF SSLSYLKKLP LDQLKIDQSF IRSLPHDKED
LAIVDAIIAV GLAVGVEVIA EGVETEAQME YLHKKGCQLG QGYGFSRPIQ QQEFLQWCQT
FHS
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