Gene Tcr_2136 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTcr_2136 
Symbol 
ID3761301 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThiomicrospira crunogena XCL-2 
KingdomBacteria 
Replicon accessionNC_007520 
Strand
Start bp2357529 
End bp2358605 
Gene Length1077 bp 
Protein Length358 aa 
Translation table11 
GC content44% 
IMG OID637786885 
Product3-dehydroquinate synthase 
Protein accessionYP_392398 
Protein GI78486473 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0337] 3-dehydroquinate synthetase 
TIGRFAM ID[TIGR01357] 3-dehydroquinate synthase 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value0.122395 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
TTGAAGACAC TAACAGTTGA ATTGGGGGAA AGAAGTTACC CTATTTTTAT TGGACAGGGT 
TTGTTAGGGC AAGCCGAACT GTTTAAACCT TATGTGACCG GAACGCAGGT TCTTATTGTG
TCGAATACCA CGGTTGCGCC GTTGTATTTG GAGAAAGCAA AACAGGCCTT TTCAGGATAT
GACGTTAAAA CTGTTATTTT GCCGGACGGG GAACAATATA AAAATCTTGA TGTCTTGAAT
CAGATTTTTG ATGTGGCGAT TGAAAACCGT TTTGACCGAA AATGCACTTT TGTGGCATTA
GGCGGTGGGG TTATCGGTGA TATGACTGGA TTTGCGGCCG CCTCTTATCA ACGAGGGGTG
AATTTTATTC AGATCCCGAC CACCTTGCTG TCACAAGTCG ACTCTTCTGT CGGCGGTAAG
ACCGGCGTAA ATCACCCGAA AGGGAAAAAC ATGATAGGCG CTTTCCATCA GCCGGAATGC
GTTGTCATTG ATACGGATAC CTTGAATACC TTGGAAGACC GAGAGTTATC TGCTGGGCTT
GCCGAGGTTA TTAAATATGG TTTGATCGTC GATTATCCAT TTTTTGAGTG GTTGGAACAA
AATCTACCAG GCCTGCTGGC AAGAGATCCA GTGGTTTTAG CTGAAGCGAT CGAACGTTCT
TGCCAGAATA AAGCGACCAT TGTGGCAAAA GATGAAAAAG AAGCCGGTCT GCGTGCGTTA
TTTAATCTGG GTCACACCTT TGGTCATGCC ATTGAAGCCG GAATGGGTTA CGGTAATTGG
TTGCATGGTG AAGGGGTCAG TGCCGGCATG ATGCAAGCAG TTTATCTGTC AAAGTTAATG
GGAGATTTAA CGCAAACAGA CCAGAAACGA ATTGCTGCCA TTTTGCAATC GGCTCATTTG
CCGGTTATGC CGCCTAAAGA AATGAGTGTT CAACAATTTC TAGATTTAAT GGCCGGTGAT
AAAAAAGTAC AGGCGGGTCA AATTCGTTTG GTTTTGTTGA AAGCGATTGG GCAAGCTTAT
GTAACCGGAG ATTACCCAGC CGAATTATTG GAACGCACCT TGATTGAGTA TCGTTAA
 
Protein sequence
MKTLTVELGE RSYPIFIGQG LLGQAELFKP YVTGTQVLIV SNTTVAPLYL EKAKQAFSGY 
DVKTVILPDG EQYKNLDVLN QIFDVAIENR FDRKCTFVAL GGGVIGDMTG FAAASYQRGV
NFIQIPTTLL SQVDSSVGGK TGVNHPKGKN MIGAFHQPEC VVIDTDTLNT LEDRELSAGL
AEVIKYGLIV DYPFFEWLEQ NLPGLLARDP VVLAEAIERS CQNKATIVAK DEKEAGLRAL
FNLGHTFGHA IEAGMGYGNW LHGEGVSAGM MQAVYLSKLM GDLTQTDQKR IAAILQSAHL
PVMPPKEMSV QQFLDLMAGD KKVQAGQIRL VLLKAIGQAY VTGDYPAELL ERTLIEYR